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BioLiP
>protein
MLILTRRVGETLMVGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEK

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7yr6:E 55 55 1.0000 1.0000 1.0000 6.94e-34 7yr6:D, 7yr6:C, 7yr6:B, 7yr7:F, 7yr7:E, 7yr7:G, 7yr7:B, 7yr7:C, 7yr7:D
2 2mf0:A 59 52 0.7273 0.6780 0.7692 2.13e-26 2jpp:A, 2jpp:B, 2mf0:B, 2mf0:C, 2mf0:D, 2mf0:E, 2mf0:F, 2mf1:A, 2mf1:B, 2mf1:C, 2mf1:D, 2mf1:E, 2mf1:F, 2mfc:A, 2mfc:C, 2mfe:A, 2mfe:C, 2mff:A, 2mff:C, 2mfg:A, 2mfg:C, 2mfh:A, 2mfh:C
3 4kji:B 65 63 0.3818 0.3231 0.3333 0.009 4kji:A
4 4rk9:A 384 31 0.1818 0.0260 0.3226 1.7 4rk9:B
5 3v0r:A 130 27 0.1818 0.0769 0.3704 2.6
6 8r3r:A 658 27 0.2000 0.0167 0.4074 4.2 8r3r:B, 8r3r:C, 8r3r:D
7 3jce:x 586 30 0.2364 0.0222 0.4333 4.8 3deg:C
8 4zoh:B 274 39 0.2727 0.0547 0.3846 5.1
9 2idv:A 177 37 0.2182 0.0678 0.3243 5.3
10 7t7u:C 70 15 0.1818 0.1429 0.6667 5.7
11 8fia:A 1772 20 0.1818 0.0056 0.5000 5.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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