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BioLiP
>protein
MLDITTITRQNVTSVVGFTSWQGTGAEALGLSGDVESARFKELLVGEIDTFTHMQRHKKERLGYDLTFSAPKGVSMQALI
HGDKTIIEAHEKAVAAAVREAEKLAQARTTRQGKSVTQNTNNLVVATFRHETSRLDPDLHTHAFVMNMTQREDGQWRALK
NDELMRNKMHLGDVYKQELALELTKAGYELRYNSKNNTFDMAH

The query sequence (length=203) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8a1c:A 301 221 1.0000 0.6744 0.9186 2.77e-144 8a1b:A, 3l57:A, 3l57:B, 3l6t:A
2 1zm5:A 293 224 0.5616 0.3891 0.5089 1.65e-70 2cdm:A, 2cdm:C, 1omh:A, 1osb:A, 1osb:C, 4pcb:A, 4pcb:C, 1qx0:A, 1s6m:A
3 5n8o:A 1432 196 0.4039 0.0573 0.4184 1.65e-39 4l0j:A, 1p4d:A, 1p4d:B, 1p4d:C, 2q7t:A, 2q7t:B, 2q7u:A
4 2a0i:A 293 196 0.3941 0.2730 0.4082 1.47e-38
5 1ckq:A 261 78 0.1034 0.0805 0.2692 4.8 1cl8:A, 1eri:A, 2oxv:A, 1qps:A, 1qrh:A, 1qri:A
6 7oik:A 4426 81 0.1084 0.0050 0.2716 6.7 7oim:A, 6tax:A, 6tay:A
7 8d32:A 186 32 0.0542 0.0591 0.3438 8.4 6wgs:A, 6wgv:A, 6wh5:A, 6wh5:B, 6wh5:C
8 6f9p:B 289 38 0.0640 0.0450 0.3421 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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