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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKYAFFLGCIMPNRYAGVEAATRTVMEKLGVELVDMTGASCCPAPGVFGSFDQKTWLTLAARNLCIAEEMGVDIVTVCNG
CYGSLFEAAHLLHDNKEALNFVNEKLDKVGKEYKGNVKVRHFAELIYNDIGVDKIAEKVERPLNINVGVHYGCHFLKPTD
VKHLGSAERPVMLDEIVEATGAKSVPYADKMMCCGAGGGVRARELELSLDMTNEKIENMIKAGADCTVNVCPFCHLQFDR
GQIEIKEKFGKEYNFPVLHLSQLLGLAMGMDPKDLALSVHQISVDPLLKKI

The query sequence (length=291) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5odc:B 291 291 1.0000 1.0000 1.0000 0.0 5odc:H, 5odh:B, 5odh:H, 5odi:B, 5odi:H, 5odq:B, 5odq:H, 5odr:B, 5odr:H
2 7bkb:B 296 293 0.5361 0.5270 0.5324 2.25e-114 7bkb:b, 7bkc:B, 7bkc:b, 7bkd:B, 7bkd:b, 7bke:B, 7bke:b
3 4lxc:A 246 103 0.0962 0.1138 0.2718 0.26 5leo:B, 5leo:A, 4lxc:B, 4lxc:C, 4lxc:D, 5nmy:A, 4qp5:A, 4qp5:B, 4qpb:A, 4qpb:B, 6rje:A, 6rk4:A
4 5c55:A 307 88 0.0928 0.0879 0.3068 1.3 5c55:B
5 3wuh:B 350 71 0.0756 0.0629 0.3099 1.9 3wuh:A
6 3s7z:B 235 98 0.0997 0.1234 0.2959 3.2
7 6jqm:A 678 49 0.0619 0.0265 0.3673 3.9 6jqm:B, 6jqm:C, 6jqm:D, 6jqm:E, 6jqm:F, 6jqn:A, 6jqn:B, 6jqn:C, 6jqn:D, 6jqn:E, 6jqn:F, 6jqo:A, 6jqo:B, 6jqo:C, 6jqo:D, 6jqo:E, 6jqo:F
8 6nbj:A 378 43 0.0550 0.0423 0.3721 4.3 4k25:A, 6nbj:B
9 3va7:A 1130 84 0.0859 0.0221 0.2976 4.8
10 1sz2:B 320 42 0.0481 0.0437 0.3333 7.4 1sz2:A
11 1d7f:A 686 27 0.0378 0.0160 0.4074 8.8 1d7f:B, 1ded:A, 1ded:B, 1i75:A, 1i75:B, 1pam:A, 1pam:B, 1ukq:A, 1ukq:B, 1uks:A, 1uks:B, 1ukt:A, 1ukt:B, 1v3j:A, 1v3j:B, 1v3k:A, 1v3k:B, 1v3l:A, 1v3l:B, 1v3m:A, 1v3m:B
12 4fir:A 333 80 0.0756 0.0661 0.2750 9.7 4fir:B, 4fir:C, 4fir:D, 4fir:E, 4fir:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218