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BioLiP
>protein
MKYADLELTTRGEFPHGMKEPGFVKKLDQNIPWYFSTYRSMYHWPITGDNWSDLNEAEKHHDLHMFYTLAWWKLGEGIFD
AND

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aor:ba 83 83 1.0000 1.0000 1.0000 1.47e-59 6hiv:DZ, 6hiw:DZ, 6hiy:DZ, 7pub:DZ
2 6sgb:DZ 30 30 0.3133 0.8667 0.8667 1.65e-13
3 7e4n:A 290 37 0.1566 0.0448 0.3514 0.21
4 4pvi:A 328 23 0.1446 0.0366 0.5217 0.56
5 4cy8:A 539 36 0.1687 0.0260 0.3889 1.6 4cy8:B, 4cy8:C, 4cy8:D
6 6em0:A 566 36 0.1687 0.0247 0.3889 1.9 5brt:A, 5brt:B, 6em0:B, 4z2r:A, 4z2r:B, 4z2t:A, 4z2t:B, 4z2u:A, 4z2u:B
7 3s27:H 797 64 0.1807 0.0188 0.2344 2.3 3s27:A, 3s27:B, 3s27:C, 3s27:D, 3s27:E, 3s27:F, 3s27:G, 3s28:A, 3s28:B, 3s28:C, 3s28:D, 3s28:E, 3s28:F, 3s28:G, 3s28:H, 3s29:A, 3s29:B, 3s29:C, 3s29:D, 3s29:E, 3s29:F, 3s29:G, 3s29:H
8 3ip5:A 348 38 0.1566 0.0374 0.3421 2.4 3ip6:A, 3ip7:A, 3ip9:A, 3ipa:A, 3ipc:A
9 7yni:A 566 18 0.0843 0.0124 0.3889 2.9
10 7omi:AAA 661 49 0.1566 0.0197 0.2653 4.9 7omi:BBB, 7omi:CCC, 7omi:DDD, 7omi:EEE, 7omi:FFF, 7oms:AAA, 7oms:DDD, 7oms:CCC, 7oms:BBB, 7oms:FFF, 7oms:EEE, 6t6g:AAA, 6t6g:DDD, 6t6g:CCC, 6t6g:BBB, 6t6g:FFF, 6t6g:EEE, 6t75:AAA, 6t75:DDD, 6t75:CCC, 6t75:BBB, 6t75:FFF, 6t75:EEE, 6t7g:AAA, 6t7g:DDD, 6t7g:CCC, 6t7g:BBB, 6t7g:FFF, 6t7g:EEE
11 3dcm:X 188 28 0.1084 0.0479 0.3214 5.1
12 4bxc:A 929 30 0.1325 0.0118 0.3667 5.9 4bxc:B, 3zgb:A, 3zgb:B, 3zge:A, 3zge:B
13 1e1c:A 727 41 0.1446 0.0165 0.2927 6.7 1e1c:C, 1req:A, 1req:C, 2req:A, 2req:C, 3req:A, 4req:A, 4req:C, 5req:A, 5req:C, 6req:A, 6req:C, 7req:A, 7req:C
14 6nbr:A 316 38 0.1446 0.0380 0.3158 7.5 6nbr:B, 6nbr:C, 6nbr:D
15 8gfp:A 516 29 0.1325 0.0213 0.3793 7.7 6cfc:A, 8gez:A, 8gf0:A, 8gf1:A, 8gfb:A, 8gfc:A, 8gfd:A, 8gfe:A, 8gff:A, 8gfg:A, 8gfh:A, 8gfi:A, 8gfl:A, 8gfm:A, 8gfq:A, 8gfs:A
16 6cx6:B 333 33 0.1446 0.0360 0.3636 8.2 6cx6:A, 5eg5:A, 4fr0:A, 4fsd:A, 4kw7:A, 4rsr:A
17 8dwj:A 339 23 0.0964 0.0236 0.3478 9.6 8dvf:H, 8dvi:H, 8dw6:H, 8gao:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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