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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV
DIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVSCNTTGLVRTLSAIREYADYV
YAVMIRRAADPNDTKRGPINAIKPTVEVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFEN
TTRVLLFEKEKGFDSTAQIIEFARDLHREWNNLYEIAVWKESINIKGNRLFYIQAVHQESDVIPENIDAIRAMFELADKW
DSIKKTNKSLGILK

The query sequence (length=334) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2czc:A 334 334 1.0000 1.0000 1.0000 0.0 2czc:B, 2czc:C, 2czc:D
2 1cf2:P 336 333 0.5539 0.5506 0.5556 1.22e-134 1cf2:R, 1cf2:O, 1cf2:Q
3 2yyy:A 342 339 0.5449 0.5322 0.5369 1.31e-115 2yyy:B
4 4p8r:A 331 270 0.1976 0.1994 0.2444 2.87e-06 4p8r:B, 4p8r:C, 4p8r:D
5 4mvj:B 332 276 0.2036 0.2048 0.2464 9.40e-06 1dc4:A, 1dc4:B, 1dc6:A, 1dc6:B, 1gad:O, 1gad:P, 1gae:O, 1gae:P, 6io6:A, 4mvj:A, 4mvj:C, 4mvj:D, 4mvj:E, 4mvj:F, 4mvj:G, 4mvj:I, 4mvj:J, 4mvj:K, 4mvj:L, 4mvj:M, 4mvj:O, 4mvj:P, 6utm:A, 6utm:B, 6utn:A, 6utn:B, 6uto:A, 6uto:B, 2vyn:A, 2vyn:B, 2vyn:C, 2vyv:A, 2vyv:B, 2vyv:C, 5za0:A
6 4lsm:A 331 261 0.1886 0.1903 0.2414 0.002 4lsm:B
7 6qun:O 334 31 0.0419 0.0419 0.4516 0.003 6qun:R, 6quq:O, 6quq:R, 4z0h:O, 4z0h:R
8 7bew:A 330 35 0.0479 0.0485 0.4571 0.006 7bex:A
9 3wgy:B 324 31 0.0479 0.0494 0.5161 0.011 3wgq:A, 3wgz:B
10 3cmc:O 334 261 0.1856 0.1856 0.2375 0.011 3cmc:P, 3cmc:Q, 3cmc:R, 1dbv:O, 1dbv:P, 1dbv:Q, 1dbv:R, 2dbv:O, 2dbv:P, 2dbv:Q, 2dbv:R, 3dbv:O, 3dbv:P, 3dbv:Q, 3dbv:R, 4dbv:O, 4dbv:P, 4dbv:Q, 4dbv:R, 1gd1:O, 1gd1:P, 1gd1:Q, 1gd1:R, 1npt:O, 1npt:P, 1npt:Q, 1npt:R, 1nq5:O, 1nq5:Q, 1nq5:A, 1nq5:C, 1nqa:O, 1nqa:P, 1nqa:Q, 1nqa:R, 1nqo:O, 1nqo:Q, 1nqo:A, 1nqo:C
11 3e5r:O 336 31 0.0389 0.0387 0.4194 0.032 3e5r:A, 3e5r:B, 3e5r:C, 3v1y:O, 3v1y:A, 3v1y:B, 3v1y:C
12 6nlx:C 335 266 0.1976 0.1970 0.2481 0.042 6nlx:B, 6nlx:D, 5ur0:A, 5ur0:B, 5ur0:C, 5ur0:D
13 3wbb:A 297 35 0.0449 0.0505 0.4286 0.049 3wbb:B, 3wbb:C, 3wbf:A, 3wbf:B, 3wbf:C
14 3wyc:A 327 37 0.0419 0.0428 0.3784 0.055 5gz3:A, 5gz3:B, 5gz6:A, 3wyc:B
15 8d0b:B 362 99 0.0749 0.0691 0.2525 0.069 8d0k:B
16 1dap:A 320 31 0.0389 0.0406 0.4194 0.077 1dap:B, 2dap:A, 3dap:A, 3dap:B, 1f06:A, 1f06:B, 5loa:A, 5loa:B
17 8de5:A 338 32 0.0419 0.0414 0.4375 0.14
18 7xzg:A 334 45 0.0449 0.0449 0.3333 0.17 7xzg:B, 7xzg:C, 7xzg:D
19 6m61:O 336 276 0.1976 0.1964 0.2391 0.18 6ade:A, 5ddi:P, 5ddi:R, 5ddi:S, 6iq6:A, 6iq6:B, 6iq6:C, 6iq6:D, 6iq6:E, 1j0x:P, 1j0x:R, 6lgj:A, 6lgj:B, 6lgj:C, 6lgj:D, 6lgk:A, 6lgk:B, 6lgk:C, 6lgm:A, 6lgm:B, 6lgm:C, 6m61:Q, 6m61:P, 4o59:O, 4o59:P, 4o59:R, 4o59:Q, 4o63:P, 4o63:Q, 4o63:R, 8p5f:AAA, 8p5f:DDD, 8p5f:EEE, 8p5f:GGG, 5tso:P, 5tso:R, 5tso:S, 7u5m:A, 7u5m:B, 7u5m:C, 7u5m:D, 1u8f:P, 1u8f:Q, 1u8f:R, 4wnc:O, 4wnc:E, 4wnc:A, 4wnc:B, 4wnc:C, 4wnc:D, 4wni:O, 4wni:A, 4wni:B, 1znq:O, 1znq:P, 1znq:R, 1znq:Q
20 8hrq:B 336 167 0.1108 0.1101 0.2216 0.20 8hro:A, 8hro:B, 8hrp:A, 8hrp:B, 8hrp:C, 8hrp:D, 8hrp:E, 8hrp:F, 8hrp:G, 8hrp:H, 8hrq:A, 8hrr:A, 8hrr:B, 8hrs:A, 8hrs:B, 8hrs:C, 8hrs:D, 8hrt:A, 8hrt:B, 8hrt:C, 8hrt:D
21 8i7h:A 297 33 0.0419 0.0471 0.4242 0.26 8i7h:B, 8i7h:C, 8i7h:D
22 8hp3:A 298 35 0.0419 0.0470 0.4000 0.26 8hp3:B, 8hp3:C
23 3gpd:R 334 258 0.1677 0.1677 0.2171 0.71 3gpd:G
24 3sth:C 340 32 0.0389 0.0382 0.4062 0.75 3sth:A, 3sth:B, 3sth:D
25 8hmn:D 340 50 0.0539 0.0529 0.3600 0.93 8hmn:A, 8hmn:B, 8hmn:C, 6iqm:A, 6iqm:B, 6iqm:C, 6iqm:D
26 7jwk:C 333 174 0.1078 0.1081 0.2069 1.2 7jwk:A, 7jwk:B, 7jwk:D
27 2r00:C 336 49 0.0479 0.0476 0.3265 1.2
28 3doc:A 335 171 0.1317 0.1313 0.2573 1.7 3doc:B, 3doc:C, 3doc:D
29 4k9d:A 338 31 0.0359 0.0355 0.3871 1.7 4k9d:B, 4k9d:C, 4k9d:D, 4k9d:E, 4k9d:F, 4k9d:G, 4k9d:H
30 1nvm:B 312 174 0.1257 0.1346 0.2414 2.2 1nvm:D, 1nvm:H
31 6px2:A 332 38 0.0389 0.0392 0.3421 3.0 6px2:B, 6px2:C, 6px2:D, 6px2:E, 6px2:F, 6px2:G, 6px2:H
32 1ywg:O 337 29 0.0359 0.0356 0.4138 3.1 2b4r:O, 2b4r:P, 2b4r:Q, 2b4r:R, 2b4t:O, 2b4t:P, 2b4t:Q, 2b4t:R, 1ywg:P, 1ywg:Q, 1ywg:R
33 2ep7:B 339 31 0.0329 0.0324 0.3548 3.7 2ep7:A
34 3gnq:C 335 33 0.0389 0.0388 0.3939 3.7 3gnq:B, 3gnq:D, 3gnq:E, 3gnq:F, 3gnq:G, 3gnq:H
35 3l0d:A 332 34 0.0329 0.0331 0.3235 4.0 3l0d:B
36 8p5d:SS0 144 48 0.0389 0.0903 0.2708 4.6 8p60:SS0, 8p60:RS0, 7qca:SS0
37 1a7k:A 358 50 0.0449 0.0419 0.3000 4.6 1a7k:B, 1a7k:C, 1a7k:D, 1gyp:A, 1gyp:B, 1gyp:C, 1gyp:D, 1gyq:A, 1gyq:B, 1gyq:C, 1gyq:D, 1i32:A, 1i32:B, 1i32:C, 1i32:D, 1i32:E, 1i32:F, 1i33:A, 1i33:B, 1i33:C, 1i33:D, 1i33:E, 1i33:F
38 3cif:A 338 36 0.0359 0.0355 0.3333 5.6 3cif:B, 3cif:C, 3cif:D, 3cps:A, 3cps:B, 8pvf:A, 1vsv:A, 1vsv:B, 1vsv:C, 1vsv:D
39 6g1h:A 342 46 0.0449 0.0439 0.3261 6.1 6g1m:A, 6g1m:B, 6g1m:C, 6g1m:D
40 8oha:B 336 43 0.0449 0.0446 0.3488 6.3 8oha:A, 8oha:C, 8oha:D, 8oha:E, 8oha:F, 8oha:G, 8oha:H
41 1obf:O 335 33 0.0389 0.0388 0.3939 6.7 1obf:P
42 7nky:Q 404 42 0.0419 0.0347 0.3333 8.6
43 5utm:A 345 178 0.1317 0.1275 0.2472 8.8 5jy6:A, 5jy6:B, 5jy6:C, 5jy6:D, 5jya:A, 5jya:B, 5jya:C, 5jya:D, 5jye:A, 5jye:C, 4qx6:A, 4qx6:B, 4qx6:C, 4qx6:D, 5utl:A, 5utl:B, 5utl:C, 5utl:D, 5utm:B, 5utm:C, 5utm:D, 5v8x:A, 5v8x:B, 5v8x:C, 5v8x:D, 5y37:A, 5y37:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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