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BioLiP
>protein
MKVKQLEDAVEELLSANYHLENAVARLKKLV

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3crp:B 34 31 1.0000 0.9118 1.0000 2.15e-15 2b1f:A, 2b1f:C, 3crp:C
2 1ysa:C 57 31 0.8065 0.4386 0.8065 2.30e-11 1dgc:A, 2dgc:A, 1ysa:D
3 3i5c:B 198 30 0.8065 0.1263 0.8333 1.92e-10 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
4 1llm:C 87 26 0.7419 0.2644 0.8846 2.42e-09 1llm:D
5 5apw:B 64 29 0.7742 0.3750 0.8276 2.55e-09
6 5apw:B 64 29 0.7419 0.3594 0.7931 8.40e-09
7 1uo4:B 31 29 0.5484 0.5484 0.5862 2.80e-06 1uo5:A
8 1uny:B 30 30 0.5484 0.5667 0.5667 3.11e-06
9 1fav:A 78 26 0.4839 0.1923 0.5769 4.73e-06 6j5e:G, 6tvq:AaA, 6tvu:AaA, 6tvw:CCC, 3vgx:C, 3vu5:A, 3vu6:A, 3w19:C, 5yb4:E, 5yb4:F, 5yb4:D
10 2bni:C 34 30 0.4839 0.4412 0.5000 8.39e-06 2bni:D, 1u9h:A
11 1czq:A 45 30 0.4516 0.3111 0.4667 1.21e-04 1gzl:A, 1gzl:B, 3l35:A, 3l35:C, 3l35:B, 3l36:A, 3l37:A, 3mgn:D, 3mgn:F, 3mgn:A, 3mgn:C, 3mgn:E, 3mgn:B, 6psa:A, 2q3i:A, 2r3c:A, 2r3c:B, 2r5b:A, 2r5b:C, 2r5b:B, 2r5d:A, 2r5d:C, 2r5d:B
12 2r2v:C 33 31 0.4839 0.4545 0.4839 0.007 2r2v:D
13 4hjb:C 30 20 0.3548 0.3667 0.5500 0.018 4hjb:D
14 6lyh:A 358 24 0.3548 0.0307 0.4583 0.68 6lyh:B, 6lyh:C, 6lyh:D, 6lyh:E, 6lyh:F, 6lyh:G, 6lyh:H
15 8tj5:0 1246 17 0.3226 0.0080 0.5882 1.7 8tj5:Y
16 3w8v:A 32 30 0.4839 0.4688 0.5000 2.9 3w8v:B, 3w92:A, 3w92:B, 3w92:C, 3w93:A, 3w93:B, 3w93:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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