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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYI
AEQIK

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2h9d:D 100 92 1.0000 0.8500 0.9239 4.37e-56 2h9c:A, 2h9c:B, 2h9d:B, 2h9d:C, 3hgw:D, 3hgx:A, 3rem:A, 3rem:B, 3ret:B
2 2h9d:A 84 85 0.9647 0.9762 0.9647 5.51e-54
3 1jkf:A 466 48 0.2000 0.0365 0.3542 0.99 1jkf:B
4 1p1i:B 498 48 0.2000 0.0341 0.3542 1.00 1p1h:B, 1p1h:D
5 1jki:A 525 48 0.2000 0.0324 0.3542 1.00 1jki:B, 1la2:A, 1la2:B, 1la2:C, 1la2:D, 1p1h:A, 1p1h:C, 1p1i:A, 1p1j:A, 1p1j:B, 1p1k:A, 1p1k:B, 1rm0:A, 1rm0:B
6 4ll2:B 224 40 0.1529 0.0580 0.3250 2.5 4oei:A, 4oei:B, 3s18:A, 3s18:B, 3v6n:A, 3v6n:B, 4yeh:A, 4yeh:B
7 5jhx:A 735 52 0.1882 0.0218 0.3077 2.7 5cjh:A, 5cjh:B, 5jhx:B, 5jhy:A, 5jhy:B, 5jhz:A, 5jhz:B, 3ut2:A, 3ut2:B
8 3ea0:B 242 49 0.2118 0.0744 0.3673 2.9 3ea0:A
9 3aib:G 844 24 0.1294 0.0130 0.4583 7.9 3aib:A, 3aib:B, 3aib:C, 3aib:D, 3aib:E, 3aib:F, 3aib:H, 3aic:A, 3aic:B, 3aic:C, 3aic:D, 3aic:E, 3aic:F, 3aic:G, 3aic:H, 3aie:A, 3aie:B, 3aie:C, 3aie:D, 3aie:E, 3aie:F, 3aie:G, 3aie:H, 8fg8:A, 8fg8:B, 8fj9:A, 8fj9:B, 8fjc:A, 8fjc:B, 8fk4:A, 8fk4:B, 8fk4:C, 8fk4:D, 8fk4:E, 8fk4:F, 8fk4:G, 8fk4:H, 8uf5:A, 8uf5:B
10 1qjs:A 408 22 0.1059 0.0221 0.4091 9.3 1qhu:A, 1qjs:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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