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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWY
IAEQIKYWRQT

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2h9d:D 100 97 1.0000 0.9100 0.9381 1.89e-61 2h9c:A, 2h9c:B, 2h9d:B, 2h9d:C, 3hgw:D, 3hgx:A, 3rem:A, 3rem:B, 3ret:B
2 2h9d:A 84 88 0.9231 1.0000 0.9545 5.28e-56
3 4ll2:B 224 40 0.1538 0.0625 0.3500 0.44 4oei:A, 4oei:B, 3s18:A, 3s18:B, 3v6n:A, 3v6n:B, 4yeh:A, 4yeh:B
4 7tlm:A 415 34 0.1209 0.0265 0.3235 1.5 7tlp:B, 7tlp:C, 7tlp:D, 7tlp:E, 7tlp:F, 7tlq:A, 7tlq:B, 7tlr:A, 7tlr:B
5 3ea0:B 242 49 0.1648 0.0620 0.3061 1.6 3ea0:A
6 7tlp:A 391 34 0.1209 0.0281 0.3235 1.7
7 7stm:A 801 49 0.1429 0.0162 0.2653 5.2 7stm:B, 7stn:A, 7stn:B, 7sto:B, 7sto:A
8 3rss:A 494 33 0.1099 0.0202 0.3030 8.2 2ax3:A, 3rrb:A, 3rre:A, 3rrf:A, 3rrj:A, 3rs8:A, 3rs9:A, 3rsf:A, 3rsg:A, 3rsq:A, 3rt7:A, 3rt9:A, 3rta:A, 3rtb:A, 3rtc:A, 3rtd:A, 3rte:A, 3rtg:A, 3ru2:A, 3ru3:A
9 7mr4:C 1083 29 0.0879 0.0074 0.2759 9.8
10 8b1t:C 1080 29 0.0879 0.0074 0.2759 9.9 8b1u:C, 1w36:F
11 3k70:C 1121 29 0.0879 0.0071 0.2759 10.0 3k70:F, 5ld2:C, 7mr3:C, 6sjb:C, 6sje:C, 6sjf:C, 6sjg:C, 6t2u:C, 6t2v:C, 1w36:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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