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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYIA
EQIKYWRQ

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2h9d:D 100 96 1.0000 0.8800 0.9167 9.70e-59 2h9c:A, 2h9c:B, 2h9d:B, 2h9d:C, 3hgw:D, 3hgx:A, 3rem:A, 3rem:B, 3ret:B
2 2h9d:A 84 86 0.9545 1.0000 0.9767 2.91e-56
3 3ea0:B 242 48 0.2045 0.0744 0.3750 1.2 3ea0:A
4 7jqh:A 313 58 0.1818 0.0511 0.2759 3.1 7jqi:A, 7jqj:A, 6ovl:A, 6oxn:A, 6p35:A
5 7aor:z 1071 40 0.1818 0.0149 0.4000 3.2
6 4ll2:B 224 40 0.1477 0.0580 0.3250 4.3 4oei:A, 4oei:B, 3s18:A, 3s18:B, 3v6n:A, 3v6n:B, 4yeh:A, 4yeh:B
7 6ywe:3 95 26 0.1250 0.1158 0.4231 5.0 6yws:3, 6ywv:3, 6ywx:3, 6ywy:3
8 3bm3:A 259 42 0.1591 0.0541 0.3333 7.8 3bm3:B
9 6hiv:Cv 1059 41 0.1705 0.0142 0.3659 8.0 6hiw:Cv, 6hiy:Cv, 7pub:Cv
10 2wtn:B 250 41 0.1818 0.0640 0.3902 8.8 2wtn:A
11 2o5c:A 634 31 0.1364 0.0189 0.3871 9.5 1i7d:A, 2o19:A, 2o19:B, 2o54:A, 2o54:B, 2o59:A, 2o59:B, 2o5c:B, 2o5e:A, 2o5e:B
12 3aib:G 844 24 0.1250 0.0130 0.4583 9.5 3aib:A, 3aib:B, 3aib:C, 3aib:D, 3aib:E, 3aib:F, 3aib:H, 3aic:A, 3aic:B, 3aic:C, 3aic:D, 3aic:E, 3aic:F, 3aic:G, 3aic:H, 3aie:A, 3aie:B, 3aie:C, 3aie:D, 3aie:E, 3aie:F, 3aie:G, 3aie:H, 8fg8:A, 8fg8:B, 8fj9:A, 8fj9:B, 8fjc:A, 8fjc:B, 8fk4:A, 8fk4:B, 8fk4:C, 8fk4:D, 8fk4:E, 8fk4:F, 8fk4:G, 8fk4:H, 8uf5:A, 8uf5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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