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BioLiP
>protein
MKTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFAASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFA
QIIHWYIAEQIKYWRQTRG

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2h9d:D 100 99 0.9899 0.9800 0.9899 1.11e-68 2h9c:A, 2h9c:B, 2h9d:B, 2h9d:C, 3hgw:D, 3hgx:A, 3rem:A, 3rem:B, 3ret:B
2 2h9d:A 84 94 0.8485 1.0000 0.8936 3.45e-55
3 4ll2:B 224 69 0.1818 0.0804 0.2609 0.59 4oei:A, 4oei:B, 3s18:A, 3s18:B, 3v6n:A, 3v6n:B, 4yeh:A, 4yeh:B
4 7rj1:A 265 46 0.1515 0.0566 0.3261 0.98 7rj1:B, 7rj1:C, 7rj1:D
5 7aor:z 1071 42 0.1717 0.0159 0.4048 1.1
6 6hiv:Cv 1059 43 0.1616 0.0151 0.3721 3.0 6hiw:Cv, 6hiy:Cv, 7pub:Cv
7 5en7:A 177 31 0.1010 0.0565 0.3226 3.3 5en6:A, 5en7:C, 5en7:E, 5en7:G
8 7mq9:LM 2005 54 0.1515 0.0075 0.2778 3.9
9 7mqa:LM 2041 54 0.1515 0.0073 0.2778 3.9
10 6q8j:A 188 37 0.1111 0.0585 0.2973 4.5
11 4iqj:A 1164 28 0.1313 0.0112 0.4643 4.8
12 4iqj:D 1185 28 0.1313 0.0110 0.4643 4.9 3e0d:A, 3e0d:B, 2hpi:A, 2hpm:A, 4iqj:B, 4iqj:C
13 2exr:A 491 38 0.1212 0.0244 0.3158 5.9 2q4w:A
14 4nx1:A 308 65 0.2020 0.0649 0.3077 8.3 4nx1:B, 4ovp:A, 4ovp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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