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BioLiP
>protein
MKRRPRKWKKKGRMRWKWIKKRIRRLKKQRRKERGLI

The query sequence (length=37) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6tmf:c 37 37 1.0000 1.0000 1.0000 4.09e-16 6skf:Bk, 6skg:Bk, 6sw9:0, 6swc:0, 6swd:0, 6th6:Bk, 7zag:0, 7zah:0, 7zai:0, 7zhg:0
2 4v6u:BW 72 24 0.2973 0.1528 0.4583 6.0 6skf:BZ, 6skg:BZ, 6th6:BZ, 4v4n:AW
3 3cvv:A 519 26 0.2162 0.0154 0.3077 7.0 7ayv:A, 7azt:A, 8c1u:A, 8c69:A, 8c6a:A, 8c6b:A, 8c6c:A, 8c6f:A, 8c6h:A, 3cvu:A, 3cvw:A, 3cvx:A, 3cvy:A, 7qut:A, 2wb2:A, 2wq6:A, 2wq7:A
4 9c4g:c 274 20 0.2432 0.0328 0.4500 7.1 8crx:c, 8cvm:c

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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