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BioLiP
>protein
MKRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1a0a:A 63 63 1.0000 1.0000 1.0000 1.78e-41 1a0a:B
2 8ia3:E 111 58 0.2857 0.1622 0.3103 5.74e-04 8ia3:A, 8ia3:B, 8ia3:F
3 7xi4:A 283 62 0.2540 0.0565 0.2581 0.002 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
4 7d8t:A 199 58 0.3016 0.0955 0.3276 0.004 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
5 4zpr:A 235 57 0.2381 0.0638 0.2632 0.008
6 5nj8:D 134 62 0.2381 0.1119 0.2419 0.038
7 8ow1:B 116 58 0.2698 0.1466 0.2931 0.042 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
8 8osl:N 290 27 0.1905 0.0414 0.4444 0.056 4h10:A, 8osk:N, 8osl:P
9 7xi3:A 287 56 0.2222 0.0488 0.2500 0.079
10 1an4:A 65 58 0.2381 0.2308 0.2586 0.085 1an4:B
11 8osk:M 316 43 0.2063 0.0411 0.3023 0.11 4h10:B, 8osl:M, 8osl:O
12 4zpr:B 279 54 0.2381 0.0538 0.2778 0.29
13 1hlo:A 80 62 0.2381 0.1875 0.2419 1.3
14 7qep:O4 100 50 0.2698 0.1700 0.3400 1.6
15 5eyo:C 88 62 0.2381 0.1705 0.2419 1.8 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
16 5i50:B 96 58 0.3016 0.1979 0.3276 2.5 5i50:A, 1nkp:A, 1nkp:D
17 5sy7:B 276 54 0.1905 0.0435 0.2222 3.1
18 4zpk:B 321 55 0.2222 0.0436 0.2545 4.5 8ck3:A, 8ck4:A, 8ck8:A, 6czw:A, 6d09:A, 6d0b:A, 6e3s:B, 6e3t:B, 6e3u:B, 3f1o:A, 4ghi:A, 4gs9:A, 3h7w:A, 3h82:A, 5tbm:A, 5ufp:A, 7w80:B, 6x21:A, 6x28:A, 6x2h:A, 6x37:A, 6x3d:A, 4xt2:C, 4zqd:B
19 2vzs:A 857 26 0.1587 0.0117 0.3846 4.7 2vzs:B, 2vzt:A, 2vzt:B, 2vzu:A, 2vzu:B, 2vzv:A, 2vzv:B, 2x05:A, 2x05:B, 2x09:A, 2x09:B
20 6rm3:LGG 100 37 0.2222 0.1400 0.3784 5.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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