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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKNFSIAKSRRLRSTPYTSRIEKQGVTAYTIYNHMLLPAAFGSIEDSYKHLKEHVQIWDVAAERQVEISGKDSAELVQLM
TCRDLSKSKIGRCYYCPIIDENGNLVNDPVVLKLDENKWWISIADSDVIFFAKGLASGHKFDVKIVEPVVDIMAIQGPKS
FALMEKVFGKKITELKFFGFDYFDFEGTKHLIARSGWSKQGGYEVYVENTQSGQKLYDHLFEVGKEFNVGPGCPNLIERI
ESALLSYGNDFDNNDNPFECGFDQYVSLDSDINFLGKEKLKEIKLKGPQKKLRGVKIDIKEISLTGSKNIYDENNNVIGE
LRSACYSPHFQKVIGIAMIKKSHWEASQGFKIQINDNTINGNVCDLPFI

The query sequence (length=369) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3tfi:A 369 369 1.0000 1.0000 1.0000 0.0 3tfi:B, 3tfj:A, 3tfj:B
2 1woo:A 362 312 0.2195 0.2238 0.2596 1.06e-30 1wop:A, 1wor:A
3 4pab:B 824 345 0.1870 0.0837 0.2000 9.10e-18 5l46:A, 5l46:B, 4p9s:A, 4p9s:B, 4paa:A, 4paa:B, 4pab:A
4 1pj6:A 828 303 0.1978 0.0882 0.2409 1.82e-16 3gsi:A, 1pj5:A, 1pj7:A
5 3a8i:A 363 334 0.1870 0.1901 0.2066 1.04e-13 3a8i:B, 3a8i:C, 3a8i:D
6 1wsv:A 371 343 0.1816 0.1806 0.1953 5.88e-13 1wsv:B
7 2gag:A 965 335 0.2005 0.0767 0.2209 8.08e-13 2gah:A
8 3ad7:A 963 339 0.2033 0.0779 0.2212 2.16e-12 3ad8:A, 3ad9:A, 3ada:A, 1vrq:A, 1x31:A
9 5x1n:A 460 277 0.1680 0.1348 0.2238 3.51e-05 5x1j:A, 5x1j:B, 5x1j:C, 5x1k:A, 5x1k:B, 5x1k:C, 5x1l:B, 5x1l:C, 5x1m:B, 5x1m:C, 5x1n:B
10 3a9y:A 403 70 0.0542 0.0496 0.2857 2.7 3a9x:A, 3a9x:B, 3a9y:B, 3a9z:A, 3a9z:B
11 4gfr:A 529 51 0.0461 0.0321 0.3333 3.5 8i5j:A, 8i5j:B, 8i5k:A, 1zu0:A
12 6zu5:SH0 156 47 0.0515 0.1218 0.4043 5.6
13 6g0l:M 855 57 0.0352 0.0152 0.2281 5.9 7nkx:W, 5o9g:W
14 8gap:H 384 73 0.0569 0.0547 0.2877 6.7
15 8xvg:L 3485 53 0.0379 0.0040 0.2642 7.0 8xvv:L
16 7ktr:A 3042 53 0.0379 0.0046 0.2642 7.7
17 3gzc:A 403 70 0.0515 0.0471 0.2714 9.0 3gzc:B, 3gzd:A, 3gzd:B, 3gzd:C, 3gzd:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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