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BioLiP
>protein
MKNFRLSEKEVKTLAKRIPTPFLVASLDKVEENYQFMRRHLPRAGVFYAMKANPTPEILSLLAGLGSHFDVASAGEMEIL
HELGVDGSQMIYANPVKDARGLKAAADYNVRRFTFDDPSEIDKMAKAVPGADVLVRIAVRTKFGAPVEEALDLLKAAQDA
GLHAMGICFHVGSQSLSTAAYEEALLVARRLFDEAEEMGMHLTDLDIGGGFPVPDALNVDLAAMMEAINKQIDRLFPDTA
VWTEPGRYMCGTAVNLVTSVIGTKTRGEQPWYILDEGIYGCFSGIMYDHWTYPLHCFGKGNKKPSTFGGPSCDGIDVLYR
DFMAPELKIGDKVLVTEMGSYTSVSATRFNGFYLAPTIIFEDQPEYAAR

The query sequence (length=369) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5gjo:A 385 380 0.9946 0.9532 0.9658 0.0 5gjn:A, 5gjo:B, 5gjp:A
2 2plj:A 376 364 0.3496 0.3431 0.3544 3.20e-72 2plj:B, 2plk:A, 2plk:B
3 1f3t:B 381 368 0.3469 0.3360 0.3478 2.13e-66 1f3t:A, 1f3t:C, 1f3t:D, 1njj:A, 1njj:B, 1njj:C, 1njj:D, 1qu4:A, 1qu4:B, 1qu4:C, 1qu4:D, 1szr:C, 1szr:D, 1szr:A, 1szr:B, 2tod:A, 2tod:B, 2tod:C, 2tod:D
4 2oo0:A 419 360 0.3415 0.3007 0.3500 1.60e-64 5bwa:A, 7odc:A, 2on3:A, 2on3:B, 2oo0:B, 7s3f:A, 7s3f:B, 7s3g:A, 7s3g:B, 7u6p:A, 7u6p:B, 7u6u:A, 7u6u:B, 4zgy:A
5 2nv9:B 372 348 0.3171 0.3145 0.3362 4.79e-45 2nv9:A, 2nv9:C, 2nv9:D, 2nv9:E, 2nv9:F, 2nv9:G, 2nv9:H, 2nva:A, 2nva:B, 2nva:C, 2nva:D, 2nva:E, 2nva:F, 2nva:G, 2nva:H
6 4xg1:A 393 370 0.2818 0.2646 0.2811 3.88e-29
7 3c5q:A 394 359 0.2547 0.2386 0.2618 2.66e-27 2qgh:A
8 1tuf:A 434 378 0.2791 0.2373 0.2725 1.31e-26 1tuf:B, 1twi:A, 1twi:B, 1twi:C, 1twi:D
9 4xg1:B 418 394 0.2900 0.2560 0.2716 8.26e-26 4xg1:C, 4xg1:D
10 7ru7:A 412 384 0.2791 0.2500 0.2682 9.76e-24 2j66:A
11 7kh2:D 415 404 0.2547 0.2265 0.2327 1.50e-21 7kh2:A, 7kh2:B, 7kh2:C
12 8d4i:A 462 395 0.2493 0.1991 0.2329 1.09e-18 8d2y:A, 8d4i:C, 8d5d:A, 8d5d:B, 8d5r:A, 8d5r:B, 8d88:A, 8d88:B
13 2yxx:A 385 321 0.1978 0.1896 0.2274 1.48e-15
14 6n2a:A 422 359 0.2385 0.2085 0.2451 2.21e-13 6n2a:B, 6n2f:B, 6n2f:A
15 1knw:A 421 371 0.2304 0.2019 0.2291 2.33e-12 1ko0:A
16 6knh:C 384 368 0.2412 0.2318 0.2418 3.15e-12 6knh:A, 6knh:B, 6kni:A, 6kni:B, 6kni:C, 6knk:A, 6knk:B, 6knk:C
17 5x7m:A 443 381 0.2466 0.2054 0.2388 7.90e-11 5x7m:B, 5x7n:A, 5x7n:B
18 1hkv:A 446 359 0.2304 0.1906 0.2368 3.00e-07 1hkv:B
19 3nzp:B 591 275 0.1734 0.1083 0.2327 1.60e-05 3nzp:A
20 3n2o:A 630 299 0.1545 0.0905 0.1906 3.86e-05 3n2o:B, 3n2o:C, 3n2o:D
21 3nzq:A 628 141 0.0949 0.0557 0.2482 0.001 3nzq:B
22 3n29:A 371 67 0.0569 0.0566 0.3134 0.031 3n29:B
23 5irp:A 386 166 0.1111 0.1062 0.2470 0.25 5irp:B, 6q70:A, 6q70:B, 6q71:A, 6q71:B, 6q72:A, 6q72:B, 6q72:D, 6q72:E
24 6dq4:A 312 136 0.0949 0.1122 0.2574 0.26 6bgu:A, 6bgv:A, 6bgw:A, 6bgx:A, 6bgy:A, 6bgz:A, 6bh1:A, 6bh2:A, 6bh3:A, 6bh4:A, 6bh5:A, 6dq5:A, 6dq6:A, 6dq7:A, 6dq8:A, 6dq9:A, 6dqa:A, 6dqb:A, 6dqc:A, 6dqd:A, 6dqe:A, 6dqf:A, 5e6h:A, 5isl:A, 5ivb:A, 5ivc:A, 5ive:A, 5ivf:A, 5ivj:A, 5ivv:A, 5ivy:A, 5iw0:A, 5iwf:A
25 3me4:A 169 67 0.0407 0.0888 0.2239 1.0 3me2:R, 3me4:B
26 4ip4:A 421 129 0.1084 0.0950 0.3101 1.1 4ip4:B, 4ip5:A, 4ip5:B
27 3ks6:A 250 102 0.0732 0.1080 0.2647 1.3 3ks5:A, 3ks5:B, 3ks6:B, 3ks6:C, 3ks6:D
28 7aih:Ah 452 97 0.0786 0.0642 0.2990 2.5 7ane:Ah
29 8hfr:ox 143 57 0.0488 0.1259 0.3158 3.1 6ft6:I, 3jct:I, 6m62:I, 6n8j:I, 6n8k:I, 6n8l:I, 7ug6:I, 7uoo:I, 7uqb:I, 7uqz:I, 7v08:I, 6ylg:I, 6ylh:I, 6yly:I, 7z34:I
30 4a0f:A 746 64 0.0515 0.0255 0.2969 3.8
31 4a0g:C 681 64 0.0515 0.0279 0.2969 4.0
32 4a0g:D 709 64 0.0515 0.0268 0.2969 4.0
33 4a0g:A 769 64 0.0515 0.0247 0.2969 4.5 4a0f:B, 4a0g:B, 4a0h:A, 4a0h:B, 4a0r:A, 4a0r:B
34 3cc2:C 246 92 0.0786 0.1179 0.3152 4.6 3cc4:C, 3cc7:C, 3cce:C, 3ccj:C, 3ccl:C, 3ccm:C, 3ccq:C, 3ccr:C, 3ccs:C, 3ccu:C, 3ccv:C, 3cd6:C, 3cma:C, 3cme:C, 3cpw:C, 3cxc:C, 1ffk:C, 3g4s:C, 3g6e:C, 3g71:C, 3i55:C, 3i56:C, 1jj2:C, 1k73:E, 1k8a:E, 1k9m:E, 1kc8:E, 1kd1:E, 1kqs:C, 1m1k:E, 1m90:E, 1n8r:E, 1nji:E, 2otj:C, 2otl:C, 3ow2:C, 1q7y:E, 1q81:E, 1q82:E, 1q86:E, 2qa4:C, 2qex:C, 1qvf:C, 1qvg:C, 1s72:C, 4v9f:C, 1vq4:C, 1vq5:C, 1vq6:C, 1vq7:C, 1vq8:C, 1vq9:C, 1vqk:C, 1vql:C, 1vqm:C, 1vqn:C, 1vqo:C, 1vqp:C, 1w2b:C, 1yhq:C, 1yi2:C, 1yij:C, 1yit:C, 1yj9:C, 1yjn:C, 1yjw:C
35 1r6v:A 671 46 0.0461 0.0253 0.3696 4.7
36 7d54:A 242 81 0.0623 0.0950 0.2840 4.9 7d54:B
37 5ygf:A 215 43 0.0407 0.0698 0.3488 8.8 5ygd:A
38 6btm:B 948 64 0.0650 0.0253 0.3750 8.9
39 5gtk:A 491 52 0.0461 0.0346 0.3269 9.7 5gtk:B, 5gtk:C, 5gtk:D, 5gtl:A, 5gtl:B, 5gtl:C, 5gtl:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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