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BioLiP
>protein
MKLLSSIEQACDICRLKKLKCSKEKPKCAKCLKNNWECRYSPK

The query sequence (length=43) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1aw6:A 43 43 1.0000 1.0000 1.0000 1.97e-24
2 3coq:A 89 36 0.8372 0.4045 1.0000 1.17e-20 3coq:B, 1d66:A, 1d66:B, 7uik:T, 7uik:U, 7uio:GA, 7uio:GB
3 1cld:A 33 33 0.4884 0.6364 0.6364 2.67e-07
4 1pyi:A 88 29 0.3488 0.1705 0.5172 0.009 1pyi:B
5 2hap:C 76 25 0.2791 0.1579 0.4800 0.092 2hap:D, 1hwt:C, 1hwt:D, 1hwt:G, 1hwt:H, 1pyc:A, 1qp9:A, 1qp9:B, 1qp9:C, 1qp9:D
6 1ajy:A 71 31 0.3023 0.1831 0.4194 2.1 1ajy:B, 1zme:C, 1zme:D
7 7ciw:A 216 15 0.1860 0.0370 0.5333 3.5 7civ:A, 7cix:A
8 8gju:J 689 29 0.2558 0.0160 0.3793 4.6 8gju:K, 8gju:L, 8gju:H
9 2xiq:A 714 29 0.2558 0.0154 0.3793 4.6 8dyj:B, 8dyl:B, 2xij:A, 2xiq:B
10 7yhq:A 393 23 0.2326 0.0254 0.4348 5.9
11 7yhp:A 374 23 0.2326 0.0267 0.4348 7.1 7yho:A
12 1kg5:A 225 20 0.1860 0.0356 0.4000 9.7 1kg2:A, 1kg3:A, 1kg4:A, 1kg6:A, 1kg7:A, 1kqj:A, 1mud:A, 1mun:A, 1muy:A, 1wef:A, 1weg:A, 1wei:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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