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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKLLLFGYGNVGKAFRKLLHEKRSPELNDVIIGGIVTRRGIMLQDKEDFTPDLEGDVFKAFEKIKPDIIVDVSSANYNNG
EPSLSLYKEAIKDGVNIITTNKAPLALAFNEIFSLARSKGVKIGFQGTVMSGTPSINLYRVLPGSRVIKIRGILNGTTNF
ILTLMNKGVSFEEALKEAQRRGYAEEDPTLDINGFDAAAKITILANFMIGNSVTIKDVKFEGINRDLKIKLIAYADEKEV
WVKPLPISQDDPLYNVDGVENALEITTDIQSILIRGPGAGPVNAAYGALSDLILLKRDCL

The query sequence (length=300) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5x9d:A 302 303 0.9933 0.9868 0.9835 0.0 7f4c:A, 7f4c:B
2 4xb1:A 319 321 0.3500 0.3292 0.3271 1.26e-41 4xb1:B, 4xb2:A, 4xb2:B
3 6a0t:B 332 286 0.3400 0.3072 0.3566 4.02e-37 6a0s:B, 6a0s:A, 6a0t:A, 6a0u:B, 6a0u:A, 2ejw:A, 2ejw:B, 2ejw:E, 2ejw:F, 5xdf:A, 5xdf:B
4 4pg7:A 402 317 0.3433 0.2562 0.3249 1.47e-30
5 3ing:A 319 321 0.2933 0.2759 0.2741 1.14e-27
6 6dzs:A 431 326 0.3100 0.2158 0.2853 1.86e-23 6dzs:B, 6dzs:C, 6dzs:D
7 3jsa:A 321 240 0.2633 0.2461 0.3292 3.14e-23
8 1ebf:A 358 149 0.1667 0.1397 0.3356 1.34e-13 1ebu:D, 1q7g:A, 1tve:A, 1tve:B
9 4bqk:A 424 50 0.0667 0.0472 0.4000 0.17 4b8o:A, 4b8p:A, 4b8p:B, 4bpl:A, 4bqk:B, 2yns:A, 2yns:B
10 6z3c:AAA 379 144 0.1033 0.0818 0.2153 0.42 6z3b:A, 6z3b:B, 6z3c:BBB
11 7xdu:B 348 139 0.1400 0.1207 0.3022 0.63 7xdu:A
12 8a3n:B 352 36 0.0433 0.0369 0.3611 0.81 8a3n:A
13 7x7q:A 185 115 0.1033 0.1676 0.2696 1.1 7x5a:A, 7x5a:C, 7x5a:F, 7x5a:B, 7x5a:G, 7x5a:D, 7x7q:C, 7x7q:F, 7x7q:D, 7x7q:E, 7x7q:H, 7x7q:B
14 1pk8:A 306 82 0.0667 0.0654 0.2439 1.4 1aux:A, 1aux:B, 1pk8:B, 1pk8:D, 1pk8:E, 1pk8:F, 1pk8:G, 1px2:A, 1px2:B
15 3p3o:A 416 93 0.0867 0.0625 0.2796 1.5 3p3l:A, 3p3l:B, 3p3x:A, 3p3x:B, 3p3z:A
16 1qzu:A 160 69 0.0667 0.1250 0.2899 2.8 1qzu:B, 1qzu:C, 1qzu:D
17 6e6t:A 266 190 0.1500 0.1692 0.2368 3.3 6e6t:B
18 3lvq:E 420 43 0.0600 0.0429 0.4186 4.1 2b0o:E, 2b0o:F, 2b0o:G, 2b0o:H, 3lvr:E
19 3c4a:A 365 133 0.1067 0.0877 0.2406 4.4
20 4rxh:B 421 24 0.0400 0.0285 0.5000 4.5 5vqi:B
21 6xjm:D 230 37 0.0467 0.0609 0.3784 6.1 6xjm:A, 6xjm:B, 6xjm:C
22 8hfr:pT 580 39 0.0567 0.0293 0.4359 6.9 5apn:x, 5apo:x, 7z34:4
23 7uoo:4 538 39 0.0567 0.0316 0.4359 7.0 6ft6:4, 3jct:4, 6m62:4, 6rzz:r, 7uqb:4, 7uqz:4, 7v08:4, 6ylg:4, 6ylh:4
24 3fe5:A 283 42 0.0500 0.0530 0.3571 7.9
25 1dap:A 320 42 0.0433 0.0406 0.3095 8.3 1dap:B, 2dap:A, 3dap:A, 3dap:B, 1f06:A, 1f06:B, 5loa:A, 5loa:B
26 5t5i:J 431 59 0.0600 0.0418 0.3051 8.7 5t5i:B, 5t5m:B, 5t61:B, 5t61:H, 5t61:N, 5t61:T, 5t61:Z, 5t61:f, 5t61:l, 5t61:r

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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