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BioLiP
>protein
MKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ny6:Y 84 84 1.0000 1.0000 1.0000 1.64e-59 6otr:QY, 6otr:QZ, 6otr:XY, 6oxa:QY, 6oxa:QZ, 6oxa:XY, 6oxi:QY, 6oxi:QZ, 6oxi:XY, 4v8x:AY, 4v8x:AZ, 4v8x:CY, 4v8x:CZ
2 6n90:B 86 86 0.5952 0.5814 0.5814 2.38e-35
3 2jun:A 101 61 0.2262 0.1881 0.3115 0.089 2dq5:A
4 7oh9:L 96 43 0.1429 0.1250 0.2791 0.53 5fz5:U, 6gyl:U, 6gym:U
5 7ns5:A 319 29 0.1071 0.0282 0.3103 1.3 7ns5:D, 7ns5:B, 7ns5:C
6 5gll:A 331 41 0.1667 0.0423 0.3415 1.6 5glk:B, 5glm:A, 5glm:B, 5gln:A, 5gln:B, 5glo:A, 5glo:B, 5glp:A, 5glp:B, 5glq:A, 5glq:B, 5glr:A, 5glr:B
7 5fmf:M 116 48 0.1429 0.1034 0.2500 2.2 8cen:U, 8ceo:U, 7ml1:U, 7ml4:U, 1nh2:C, 7o4i:U, 7o4j:U, 7o72:U, 7o73:U, 7o75:U, 7oha:L, 5sva:d, 1ytf:C, 7zs9:U, 7zsa:U, 7zsb:U
8 3gme:A 482 57 0.1548 0.0270 0.2281 2.4
9 7ogk:A 695 55 0.1310 0.0158 0.2000 3.0 3gcm:A, 3gcm:B, 3gcm:C, 3h1c:A, 3h1c:B, 3h1c:C, 3h1c:K, 3h1c:G, 3h1c:I, 3h1c:M, 3h1c:O, 3h1c:R, 3h1c:T, 3h1c:V, 3h1c:X, 7ogk:B, 7ogk:C, 7ogm:L, 7ogm:N, 7ogm:O
10 6acx:A 1175 33 0.1071 0.0077 0.2727 3.8 6acx:B
11 4eeu:A 109 25 0.1310 0.1009 0.4400 5.4 7aby:A, 4eet:D, 4nxb:A, 4nxb:B, 4nxe:A, 4nxe:B, 4nxf:A, 4nxf:B, 4nxg:A, 4nxg:B
12 5iy6:C 275 32 0.1310 0.0400 0.3438 5.8 8a3y:C, 7b0y:C, 8b3d:C, 8b3f:C, 7b7u:C, 8bvw:C, 8byq:C, 8bz1:C, 6drd:C, 7edx:q, 7eg7:q, 7eg8:q, 7eg9:q, 7ega:q, 7egb:q, 7egc:q, 7ena:PC, 7enc:PC, 6exv:C, 6gmh:C, 6gml:C, 8gxq:PC, 8gxs:PC, 5iy7:C, 5iy8:C, 5iy9:C, 5iya:C, 5iyb:C, 5iyc:C, 7lbm:C, 7nvr:C, 7nvs:C, 7nvt:C, 7nvu:C, 7nvy:C, 7nvz:C, 7nw0:C, 8oeu:C, 8oev:C, 8oew:C, 8of0:C, 7okx:C, 7oky:C, 7ol0:C, 7oo3:C, 7oob:C, 7oop:C, 7opc:C, 7opd:C, 7ozn:C, 7ozn:O, 7ozo:C, 7ozo:O, 7ozp:C, 7ozp:O, 8p4a:C, 8p4b:C, 8p4e:C, 7pks:C, 8rbx:C, 8s51:C, 8s52:C, 8s54:C, 8s55:C, 8s5n:C, 6ted:C, 8uha:C, 8uhd:C, 8uhg:C, 8ui0:C, 8uis:C, 7unc:C, 7und:C, 8w8e:C, 8w8f:C, 8wak:q, 8wal:q, 8wan:q, 8wao:q, 8wap:q, 8waq:q, 8war:q, 8was:q, 8wat:q, 8wau:q, 8wav:q, 8waw:q, 8wax:q, 8way:q, 8waz:q, 8wb0:q, 7ycx:3, 7zwd:C, 7zx7:C, 7zx8:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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