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BioLiP
>protein
MKLIVAIVRPEKLNEVLKALFQAEVRGLTLSRVQGHGLHEKVRLEIGVSEPFVKPTVEAILKAARTGEVGDGKIFVLPVE
KVYRIRTGEED

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1v3s:A 97 95 1.0000 0.9381 0.9579 8.61e-58 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
2 3ta0:C 99 94 0.5165 0.4747 0.5000 1.11e-24 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
3 3lf0:A 99 91 0.4835 0.4444 0.4835 1.99e-24
4 8wm7:G 94 94 0.5385 0.5213 0.5213 3.00e-24
5 4cnz:A 100 96 0.5165 0.4700 0.4896 5.24e-24 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
6 4c3k:D 101 94 0.5275 0.4752 0.5106 6.20e-24 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
7 1ul3:B 94 91 0.5275 0.5106 0.5275 7.27e-24 1ul3:C
8 5l9n:A 92 91 0.4725 0.4674 0.4725 9.66e-24
9 2eg2:A 95 89 0.4945 0.4737 0.5056 4.79e-23
10 3lf0:B 112 105 0.4835 0.3929 0.4190 4.79e-22 3lf0:C
11 4cnz:E 112 108 0.5165 0.4196 0.4352 4.95e-22 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
12 3ta1:D 115 108 0.5165 0.4087 0.4352 5.13e-22 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
13 2gnk:A 95 91 0.4176 0.4000 0.4176 6.67e-22
14 3n5b:A 112 108 0.5275 0.4286 0.4444 2.07e-21 8wm7:E
15 2j9d:B 103 94 0.5165 0.4563 0.5000 2.52e-21 2j9d:H, 2j9d:K
16 2o66:B 108 85 0.4615 0.3889 0.4941 4.64e-21 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
17 2xbp:A 113 108 0.5275 0.4248 0.4444 8.01e-21 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
18 7p4v:A 113 106 0.4615 0.3717 0.3962 1.01e-19
19 2rd5:D 126 102 0.4945 0.3571 0.4412 1.71e-19 2rd5:C
20 6yc7:F 94 89 0.4176 0.4043 0.4270 4.13e-19
21 2j9e:B 119 107 0.5165 0.3950 0.4393 7.43e-19 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
22 4ozl:A 104 91 0.4615 0.4038 0.4615 1.22e-17 4ozn:B
23 2ns1:B 113 108 0.4176 0.3363 0.3519 1.26e-17 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
24 6yc7:A 105 99 0.4176 0.3619 0.3838 1.41e-17 6yc7:B, 6yc7:E, 6yc7:C
25 7p50:A 121 106 0.4286 0.3223 0.3679 3.48e-16 7p50:B, 7p50:C
26 3ncr:C 116 106 0.5055 0.3966 0.4340 7.60e-16 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
27 4ozn:A 116 103 0.4615 0.3621 0.4078 1.14e-15 4ozj:A, 4ozn:C
28 4usj:C 142 104 0.4505 0.2887 0.3942 1.08e-12 4usi:A, 4usi:C, 4usi:B, 4usj:D
29 7o4x:A 103 94 0.4066 0.3592 0.3936 7.12e-11
30 4rx6:B 115 101 0.3626 0.2870 0.3267 4.53e-09 4r25:A, 4rx6:A, 4rx6:D
31 4wk1:A 92 85 0.2418 0.2391 0.2588 6.52e-04
32 4d3h:B 104 96 0.2418 0.2115 0.2292 0.14 4d3h:A, 4d3h:C
33 4rle:A 116 109 0.2967 0.2328 0.2477 0.44
34 4b65:A 456 75 0.1978 0.0395 0.2400 0.77 4b63:A, 4b64:A, 4b66:A, 4b67:A, 4b68:A, 4b69:A, 5cku:A, 7jvk:A, 7jvk:B, 7jvk:C, 7jvk:D, 7jvl:A, 7jvl:B, 7jvl:C, 7jvl:D, 4nzh:A, 6x0h:A, 6x0h:B, 6x0h:C, 6x0h:D, 6x0i:A, 6x0i:B, 6x0i:C, 6x0i:D, 6x0j:A, 6x0j:B, 6x0j:C, 6x0j:D, 6x0k:A, 6x0k:B, 6x0k:C, 6x0k:D, 6x0k:E, 6x0k:F, 6x0k:G, 6x0k:H
35 8c6j:V 934 42 0.1648 0.0161 0.3571 2.0 6hys:A, 6hys:B, 6hys:C, 6hys:D, 6hyt:A, 6hyt:B, 6hyt:C, 6hyt:D, 6hyu:A
36 6hyu:C 585 40 0.1758 0.0274 0.4000 2.6
37 7kua:A 149 24 0.1209 0.0738 0.4583 2.9
38 8d4i:A 462 44 0.1758 0.0346 0.3636 3.8 8d2y:A, 8d4i:C, 8d5d:A, 8d5d:B, 8d5r:A, 8d5r:B, 8d88:A, 8d88:B
39 3w15:A 336 27 0.1099 0.0298 0.3704 4.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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