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BioLiP
>protein
MKLITAIVKPFTLTDIKDALEQAGVQGMTVTETQGFFVPKVKIEVIISDAQAEEVINIIVETARTGKVGDGKVWMTNIEE
LVRVRTGERGEAAL

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6yc7:F 94 94 1.0000 1.0000 1.0000 1.50e-62
2 6yc7:A 105 105 1.0000 0.8952 0.8952 2.25e-59 6yc7:B, 6yc7:E, 6yc7:C
3 3lf0:A 99 97 0.6489 0.6162 0.6289 1.27e-39
4 3lf0:B 112 111 0.6489 0.5446 0.5495 2.29e-37 3lf0:C
5 2gnk:A 95 95 0.5532 0.5474 0.5474 2.73e-34
6 2eg2:A 95 95 0.5745 0.5684 0.5684 4.37e-34
7 2ns1:B 113 112 0.5532 0.4602 0.4643 1.47e-31 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
8 4cnz:A 100 100 0.5106 0.4800 0.4800 1.66e-29 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
9 5l9n:A 92 92 0.4681 0.4783 0.4783 1.02e-28
10 1ul3:B 94 94 0.4468 0.4468 0.4468 7.22e-28 1ul3:C
11 4cnz:E 112 112 0.5106 0.4286 0.4286 1.34e-27 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
12 4c3k:D 101 98 0.4787 0.4455 0.4592 7.26e-27 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
13 8wm7:G 94 93 0.4362 0.4362 0.4409 4.72e-26
14 2o66:B 108 92 0.4574 0.3981 0.4674 1.02e-25 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
15 7p4v:A 113 112 0.5213 0.4336 0.4375 6.72e-25
16 2xbp:A 113 112 0.4787 0.3982 0.4018 4.59e-24 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
17 3n5b:A 112 112 0.4468 0.3750 0.3750 5.74e-24 8wm7:E
18 2j9d:B 103 99 0.4894 0.4466 0.4646 6.58e-24 2j9d:H, 2j9d:K
19 2rd5:D 126 109 0.4574 0.3413 0.3945 9.38e-23 2rd5:C
20 3ncr:C 116 112 0.4894 0.3966 0.4107 1.63e-22 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
21 7p50:A 121 112 0.4787 0.3719 0.4018 2.55e-22 7p50:B, 7p50:C
22 3ta0:C 99 97 0.4468 0.4242 0.4330 4.87e-22 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
23 2j9e:B 119 112 0.4894 0.3866 0.4107 7.28e-22 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
24 3ta1:D 115 111 0.4468 0.3652 0.3784 1.05e-19 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
25 1v3s:A 97 97 0.4255 0.4124 0.4124 2.80e-19 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
26 7o4x:A 103 100 0.3936 0.3592 0.3700 5.72e-16
27 4ozl:A 104 97 0.4043 0.3654 0.3918 4.87e-14 4ozn:B
28 4usj:C 142 106 0.3511 0.2324 0.3113 1.27e-13 4usi:A, 4usi:C, 4usi:B, 4usj:D
29 4ozn:A 116 109 0.4043 0.3276 0.3486 7.44e-12 4ozj:A, 4ozn:C
30 4rx6:B 115 106 0.2872 0.2348 0.2547 2.82e-07 4r25:A, 4rx6:A, 4rx6:D
31 1jg1:A 215 81 0.2766 0.1209 0.3210 0.046 1jg2:A, 1jg3:A, 1jg3:B, 1jg4:A
32 5hha:B 272 78 0.2128 0.0735 0.2564 0.12 5hha:A
33 2o2s:A 303 58 0.2340 0.0726 0.3793 0.38 3nj8:A, 3nj8:B, 4o1m:A, 4o1m:B, 4o1m:C, 4o1m:D, 4o1m:E, 4o1m:F, 2o2s:B
34 2ber:A 601 71 0.2128 0.0333 0.2817 1.4 2bzd:A, 2bzd:B, 2bzd:C, 1eus:A, 1euu:A, 1w8n:A, 1w8o:A, 1wcq:A, 1wcq:B, 1wcq:C
35 4yd9:A 1656 54 0.1383 0.0079 0.2407 1.7 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
36 7yfg:B 652 36 0.1277 0.0184 0.3333 3.0 8e94:B, 7yfg:D, 7yfh:B, 7yfh:D
37 4k2m:A 442 34 0.1064 0.0226 0.2941 3.1 4k2i:A, 4k2i:B, 4k2m:B
38 7yfi:D 749 36 0.1277 0.0160 0.3333 3.3
39 6mfb:D 386 14 0.0957 0.0233 0.6429 4.2 6mfb:A, 6mfb:B, 6mfb:C
40 3ktc:A 330 20 0.0957 0.0273 0.4500 4.4 3ktc:B
41 1rpx:A 230 32 0.1277 0.0522 0.3750 5.1 1rpx:B, 1rpx:C
42 7olc:Lh 122 20 0.0957 0.0738 0.4500 6.0 8i9p:Lh, 8i9r:Lh, 8i9t:Lh, 8i9v:Lh, 8i9w:Lh, 8i9x:Lh, 8i9y:Lh, 8i9z:Lh, 8ia0:Lh, 7old:Lh, 8onz:Lh, 8oo0:Lh, 8pv1:Lh, 8pv2:Lh, 8pv3:Lh, 8pv4:Lh, 8pv5:Lh, 8pv6:Lh, 8pv7:Lh, 8pv8:Lh, 8pvk:Lh, 8pvl:Lh, 7z3n:Lh, 7z3o:Lh
43 1u9z:A 274 48 0.1809 0.0620 0.3542 6.4 1u9z:B, 1u9z:C, 1u9z:D
44 7r81:B2 209 47 0.1596 0.0718 0.3191 7.4 7olc:SA, 7old:SA, 8oo0:SA, 7z3n:SA, 7z3o:SA
45 2ags:A 634 37 0.1596 0.0237 0.4054 7.6 2a75:A, 2fhr:A, 1mz6:A, 1n1t:A, 1n1v:A, 1n1y:A
46 8dh0:F 796 38 0.1383 0.0163 0.3421 7.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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