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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKLEPLLSDVPRLLMEADLVPVQGTRFQPTGFPDLGAAHYEGPDGRPMLLVESAQSMANRLETVCWDKDADDWVVPLRGL
PVVKVLDKAGKPLTNSVLEAHRLNSPYILEGKDKTLFDLLKQELAHMEEGPVDIRKLAETLLKVDANAVLHGVFLAKKEL
AGGRLRLPRALSAFIEAEDVRVASSGGVKNDHVNPSGDTSRGFGNVPFARDEYVSPRIKAYFNLDLAQIRAFGLGEQVDR
LLIALALYKVRRFLVHGLRLRTACDLDCQALRVTRPEGWEVPELSELEAALPGLIEAVAGEGRFAQPAVTIVTYEK

The query sequence (length=316) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ane:A 316 316 1.0000 1.0000 1.0000 0.0 8ane:B, 8ane:C, 8ane:D, 8ane:E, 8ane:F, 8ane:G
2 6rxt:CD 420 58 0.0570 0.0429 0.3103 0.59 5oql:U, 6rxu:CD, 6rxv:CD, 6rxx:CD, 6rxy:CD, 6rxz:CD
3 6k35:A 640 89 0.0918 0.0453 0.3258 0.82 6k35:B
4 7ajt:CD 380 67 0.0633 0.0526 0.2985 0.98 7aju:CD, 7d4i:3D, 7d5s:3D, 7d5t:3D, 7d63:3D, 6ke6:3D, 6lqp:3D, 6lqq:3D, 6lqr:3D, 6lqs:3D, 6lqt:3D, 6lqu:3D, 6lqv:3D, 6nd4:a, 7suk:SA, 5wlc:SA, 5wyj:3D, 5wyk:3D, 6zqa:CD, 6zqb:CD, 6zqc:CD, 6zqd:CD
5 7s05:B 437 69 0.0570 0.0412 0.2609 1.3 7s05:A
6 2b4b:B 170 60 0.0443 0.0824 0.2333 2.7 2b3v:A, 2b4b:A, 2b4d:A, 2b4d:B, 2b58:A, 3bj7:A, 3bj7:B, 3bj7:C, 3bj7:D, 3bj8:A, 3bj8:B, 3bj8:C, 3bj8:D, 2fxf:A, 2fxf:B, 2jev:A, 2jev:B
7 3a2k:A 462 118 0.0854 0.0584 0.2288 5.2 3a2k:B
8 8b9d:7 576 31 0.0348 0.0191 0.3548 8.1
9 7plo:7 607 31 0.0348 0.0181 0.3548 8.3 7pfo:7
10 7w1y:F 643 31 0.0348 0.0171 0.3548 8.6 7w1y:7
11 6xtx:7 598 31 0.0348 0.0184 0.3548 8.9 6xty:7
12 5ex8:A 414 70 0.0728 0.0556 0.3286 9.5 5ex9:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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