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BioLiP
>protein
MKKWVCTVCGYIYDEDAGDPDNGISPGTKFEELPDDWVCPLCGVGKDQFEKLED

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2pvx:B 54 54 1.0000 1.0000 1.0000 4.80e-35 2pvx:A, 2pvx:C, 2pvx:D, 2pvx:E, 2pvx:F, 2pvx:G, 2pvx:H
2 5ai2:A 54 54 0.8519 0.8519 0.8519 2.25e-30 5ai3:A, 4ar3:A, 4ar4:A, 4ar5:A, 4ar6:A, 9bkl:A, 9bkp:A, 9bkt:A, 1bq8:A, 1bq9:A, 1brf:A, 1caa:A, 1cad:A, 1iu5:A, 1iu6:A, 4k9f:A, 3kyu:A, 3kyv:A, 3kyw:A, 3kyx:A, 3kyy:A, 5nw3:A, 5ome:A, 3ryg:A, 3rz6:A, 3rzt:A, 3ss2:A, 1vcx:A, 1zrp:A
3 6gps:A 330 54 0.7222 0.1182 0.7222 9.28e-30 6gpx:A
4 4xnw:C 350 54 0.7222 0.1114 0.7222 1.14e-29 4xnv:A, 4xnw:A
5 5xpd:A 269 52 0.7037 0.1413 0.7308 3.12e-29
6 5vbl:B 353 54 0.7222 0.1105 0.7222 1.33e-28 6knm:B, 7sus:A
7 6li2:A 347 54 0.7222 0.1124 0.7222 1.56e-28
8 6bd4:A 379 54 0.7222 0.1029 0.7222 1.84e-28
9 6iiv:A 461 54 0.7222 0.0846 0.7222 1.87e-28 1b13:A, 1b2j:A, 1b2o:A, 1b2o:B, 1be7:A, 1bfy:A, 1c09:A, 1c09:B, 1c09:C, 1fhh:A, 1fhm:A, 6iiu:A, 1irn:A, 1iro:A, 1r0h:A, 4rxn:A, 5rxn:A, 1smm:A, 1smu:A, 1smw:A, 1t9o:A, 1t9o:B, 1t9o:C, 1t9p:A, 1t9p:B, 1t9p:C, 1t9q:A
10 6me8:A 449 53 0.7222 0.0869 0.7358 2.75e-28 6me6:A, 6me7:A, 6me9:A
11 1yk5:A 53 53 0.7593 0.7736 0.7736 2.46e-27 2pya:A, 1yk4:A, 1yk5:B, 1yk5:C, 1yk5:D
12 6ln2:A 437 54 0.7222 0.0892 0.7222 2.77e-27 3c59:A, 3c5t:A, 3iol:A, 5otu:A, 5otu:C, 5otv:C, 5otv:A, 5otw:C, 5otw:A, 5otx:A, 5otx:C, 4zgm:A
13 7f1t:A 423 54 0.7037 0.0898 0.7037 2.44e-26 6akx:A, 6akx:B, 6aky:A, 5d65:B, 5d65:A, 5d65:D, 4mbs:A, 4mbs:B, 5uiw:A
14 2dsx:A 52 51 0.6667 0.6923 0.7059 5.60e-22 1rdg:A
15 2kkd:A 52 50 0.6296 0.6538 0.6800 2.07e-21 2ql0:A, 1rb9:A, 1rdv:A, 2rdv:A, 2rdv:B, 2rdv:C, 7rxn:A, 8rxn:A
16 2pve:A 52 52 0.5741 0.5962 0.5962 2.09e-21 2pve:B, 2pve:C
17 7e0l:A 491 51 0.6111 0.0672 0.6471 2.49e-19 7e0l:B, 7e0l:K, 7e0l:M, 7wsx:A, 7wsx:B
18 2v3b:B 53 53 0.5926 0.6038 0.6038 3.70e-19
19 1s24:A 56 52 0.5000 0.4821 0.5192 2.17e-16
20 2kn9:A 81 52 0.4630 0.3086 0.4808 3.08e-13 7a9a:A, 7a9a:B, 7a9a:C, 7a9a:D, 7a9a:E, 7a9a:F, 7a9a:G, 7a9a:H
21 8f6t:A 428 51 0.5000 0.0631 0.5294 3.36e-13
22 8ito:B 74 51 0.4630 0.3378 0.4902 7.13e-13 8ito:A
23 2ms3:A 57 47 0.4259 0.4035 0.4894 1.18e-12
24 6rxn:A 45 50 0.4815 0.5778 0.5200 3.01e-12
25 1dx8:A 70 51 0.4259 0.3286 0.4510 1.29e-11 1h7v:A
26 2hr5:A 170 52 0.2778 0.0882 0.2885 0.074 2hr5:B, 3mps:A, 3mps:B, 3mps:D, 3mps:I, 3mps:F, 3mps:K, 3mps:G, 3mps:H, 1nnq:A, 1nnq:B, 3pwf:A, 3pwf:B, 3pza:A, 3pza:B, 3qvd:A, 3qvd:B, 3qvd:C, 3qvd:D, 3qvd:E, 3qvd:F, 3qvd:G, 3qvd:H
27 1b71:A 191 50 0.2963 0.0838 0.3200 0.13 1dvb:A, 1jyb:A, 1lkm:A, 1lko:A, 1lkp:A, 1qyb:A, 1ryt:A, 1s2z:A, 1s30:A
28 4tpu:A 169 49 0.2963 0.0947 0.3265 0.13
29 3i74:A 642 43 0.2593 0.0218 0.3256 0.17 3i74:B
30 3npc:A 357 15 0.1852 0.0280 0.6667 0.36 3e7o:A, 3e7o:B, 8elc:A, 7n8t:A, 3npc:B
31 2d1g:A 481 32 0.2222 0.0249 0.3750 0.50 2d1g:B
32 3igy:B 549 37 0.2407 0.0237 0.3514 1.3 3igz:B
33 8bzx:B 568 29 0.2222 0.0211 0.4138 1.4
34 1yux:B 202 45 0.2593 0.0693 0.3111 1.7 1yux:A, 1yuz:A, 1yuz:B, 1yv1:A, 1yv1:B
35 8fac:A 1377 24 0.1852 0.0073 0.4167 1.8 8e04:A
36 8e05:A 1749 24 0.1852 0.0057 0.4167 1.9 8e05:B, 8e06:A
37 8b37:B 681 13 0.1481 0.0117 0.6154 2.0 8b37:A
38 8a9c:B 520 23 0.2222 0.0231 0.5217 3.2
39 7lxd:A 1190 23 0.1852 0.0084 0.4348 4.1 6v8p:A
40 7s0t:A 1231 23 0.1852 0.0081 0.4348 4.1
41 8tlq:A 1283 23 0.1852 0.0078 0.4348 4.5 8tlt:A, 6v93:A
42 6itd:A 328 20 0.1667 0.0274 0.4500 4.5 6k36:A, 6k37:A, 6k38:A
43 1vli:A 358 23 0.1667 0.0251 0.3913 4.6
44 3m8u:A 508 20 0.1852 0.0197 0.5000 5.9
45 2o1s:A 536 34 0.2778 0.0280 0.4412 7.1 2o1s:C
46 6asb:I 121 37 0.2407 0.1074 0.3514 8.2 6asb:C, 6asb:L
47 2lcq:A 161 17 0.1852 0.0621 0.5882 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417