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BioLiP
>protein
MKKILAINFSTASKKGEGTGYAFRKDGQVYVGSIKAYNPKKTAWERTFDIVNAIKDIIDEFDLKGYHLAIETPIMGRNRK
HSITLANCNGYFIGAIDGLVNGYTFIDNSKWCSYHLISGKREQRKEESLELLKATGLVDSNCKDDNIADAYNILTYCEHL

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ktz:A 160 160 1.0000 1.0000 1.0000 1.05e-118 4ktz:B
2 8pv6:Cz 103 25 0.0750 0.1165 0.4800 0.58 8i9t:Cz, 8i9v:Cz, 8i9w:Cz, 8i9x:Cz, 8i9y:Cz, 8i9z:Cz, 8ia0:Cz, 8pv1:Cz, 8pv2:Cz, 8pv3:Cz, 8pv4:Cz, 8pv5:Cz, 8pv7:Cz, 8pv8:Cz, 8pvk:Cz, 8pvl:Cz
3 3ngl:A 275 78 0.1187 0.0691 0.2436 1.1 3ngl:C
4 2htv:A 388 69 0.1187 0.0490 0.2754 1.5 2htv:B, 2htw:A
5 6ezn:F 650 46 0.1187 0.0292 0.4130 2.0 8agb:A, 8age:A, 6c26:A, 7oci:F
6 8agc:A 697 46 0.1187 0.0273 0.4130 2.0
7 6fb3:A 1836 22 0.0688 0.0060 0.5000 4.1 6fb3:B, 6fb3:C, 6fb3:D, 6ska:A, 6ske:A, 6ske:C
8 3vyk:A 128 63 0.1000 0.1250 0.2540 6.2
9 7r2e:A 244 51 0.1000 0.0656 0.3137 6.3 7r2e:B
10 5txe:A 652 38 0.0563 0.0138 0.2368 9.5 5txe:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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