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BioLiP
>protein
MKKIEAIVRAEKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNS
AFTGSPGDGKIFIIPVEDVVRIRTGERGDDSLEHH

The query sequence (length=115) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ncr:C 116 115 1.0000 0.9914 1.0000 3.48e-79 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
2 3ta1:D 115 115 0.6000 0.6000 0.6000 2.01e-42 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
3 2j9e:B 119 116 0.5913 0.5714 0.5862 5.55e-41 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
4 7p4v:A 113 112 0.5565 0.5664 0.5714 4.01e-40
5 7p50:A 121 108 0.5391 0.5124 0.5741 3.18e-38 7p50:B, 7p50:C
6 2j9d:B 103 112 0.5217 0.5825 0.5357 9.19e-33 2j9d:H, 2j9d:K
7 2xbp:A 113 112 0.5130 0.5221 0.5268 2.62e-31 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
8 3n5b:A 112 112 0.4957 0.5089 0.5089 1.15e-30 8wm7:E
9 3ta0:C 99 106 0.5217 0.6061 0.5660 1.23e-30 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
10 3lf0:B 112 112 0.4522 0.4643 0.4643 6.53e-30 3lf0:C
11 2eg2:A 95 112 0.5304 0.6421 0.5446 1.86e-29
12 2rd5:D 126 110 0.4870 0.4444 0.5091 6.89e-28 2rd5:C
13 2ns1:B 113 112 0.4174 0.4248 0.4286 5.46e-27 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
14 4cnz:E 112 112 0.4435 0.4554 0.4554 7.53e-27 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
15 4c3k:D 101 115 0.4783 0.5446 0.4783 6.10e-25 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
16 8wm7:G 94 108 0.4609 0.5638 0.4907 1.43e-24
17 3lf0:A 99 112 0.4087 0.4747 0.4196 1.09e-23
18 2o66:B 108 109 0.4348 0.4630 0.4587 1.84e-23 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
19 6yc7:A 105 112 0.4174 0.4571 0.4286 2.00e-23 6yc7:B, 6yc7:E, 6yc7:C
20 4ozn:A 116 112 0.4522 0.4483 0.4643 1.36e-22 4ozj:A, 4ozn:C
21 5l9n:A 92 109 0.4435 0.5543 0.4679 1.96e-22
22 4cnz:A 100 112 0.4174 0.4800 0.4286 2.05e-22 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
23 6yc7:F 94 112 0.4000 0.4894 0.4107 2.19e-22
24 4usj:C 142 107 0.4348 0.3521 0.4673 5.33e-21 4usi:A, 4usi:C, 4usi:B, 4usj:D
25 1ul3:B 94 112 0.4348 0.5319 0.4464 5.33e-21 1ul3:C
26 7o4x:A 103 112 0.3913 0.4369 0.4018 7.99e-21
27 2gnk:A 95 112 0.3739 0.4526 0.3839 7.08e-20
28 4rx6:B 115 112 0.3478 0.3478 0.3571 2.67e-17 4r25:A, 4rx6:A, 4rx6:D
29 4ozl:A 104 112 0.4087 0.4519 0.4196 3.52e-17 4ozn:B
30 1v3s:A 97 106 0.4087 0.4845 0.4434 1.99e-16 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
31 5hei:A 246 24 0.0870 0.0407 0.4167 4.2 5hei:B, 5hei:C, 5hei:D, 5hei:E, 5hei:F, 5hei:G, 5hei:H
32 1rqg:A 606 55 0.1391 0.0264 0.2909 4.5
33 6rop:B 831 62 0.1565 0.0217 0.2903 6.7
34 5my0:A 852 62 0.1565 0.0211 0.2903 7.5 5my0:C, 5my0:D, 5my2:D, 6rop:A, 6rop:C, 6rop:D
35 8arp:C 445 95 0.1913 0.0494 0.2316 8.6 8arp:A, 8arp:B, 8arp:D, 8arp:E, 8arp:F
36 3cdx:A 329 34 0.0957 0.0334 0.3235 9.8 3cdx:B, 3cdx:C, 3cdx:D, 3cdx:E, 3cdx:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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