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BioLiP
>protein
MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVS
PVDQTIRIRTGEKNADA

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4c3k:D 101 97 1.0000 0.9604 1.0000 8.57e-64 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
2 2xbp:A 113 111 0.9897 0.8496 0.8649 4.22e-59 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
3 8wm7:G 94 94 0.8660 0.8936 0.8936 6.45e-56
4 3n5b:A 112 111 0.8866 0.7679 0.7748 4.91e-54 8wm7:E
5 1ul3:B 94 97 0.7938 0.8191 0.7938 9.49e-50 1ul3:C
6 3lf0:A 99 97 0.5876 0.5758 0.5876 1.00e-37
7 3lf0:B 112 110 0.5979 0.5179 0.5273 2.63e-36 3lf0:C
8 2eg2:A 95 97 0.6186 0.6316 0.6186 5.37e-34
9 5l9n:A 92 94 0.5979 0.6304 0.6170 2.46e-32
10 4cnz:A 100 99 0.5876 0.5700 0.5758 4.30e-32 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
11 4cnz:E 112 111 0.5979 0.5179 0.5225 3.65e-31 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
12 3ta0:C 99 97 0.5464 0.5354 0.5464 2.35e-30 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
13 2j9d:B 103 98 0.5876 0.5534 0.5816 2.44e-30 2j9d:H, 2j9d:K
14 2o66:B 108 95 0.5464 0.4907 0.5579 2.84e-30 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
15 7p4v:A 113 111 0.5979 0.5133 0.5225 7.86e-30
16 2rd5:D 126 110 0.5567 0.4286 0.4909 2.12e-28 2rd5:C
17 2j9e:B 119 111 0.5876 0.4790 0.5135 1.43e-27 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
18 2gnk:A 95 97 0.5258 0.5368 0.5258 1.44e-27
19 2ns1:B 113 111 0.5464 0.4690 0.4775 3.17e-27 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
20 6yc7:F 94 97 0.4639 0.4787 0.4639 7.23e-27
21 6yc7:A 105 104 0.4742 0.4381 0.4423 1.10e-26 6yc7:B, 6yc7:E, 6yc7:C
22 3ta1:D 115 111 0.5464 0.4609 0.4775 2.34e-26 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
23 7p50:A 121 111 0.5361 0.4298 0.4685 5.61e-26 7p50:B, 7p50:C
24 3ncr:C 116 111 0.5670 0.4741 0.4955 1.21e-24 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
25 1v3s:A 97 95 0.5052 0.5052 0.5158 1.26e-24 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
26 4usj:C 142 110 0.5052 0.3451 0.4455 3.61e-21 4usi:A, 4usi:C, 4usi:B, 4usj:D
27 7o4x:A 103 99 0.4227 0.3981 0.4141 1.34e-19
28 4ozl:A 104 97 0.4845 0.4519 0.4845 5.52e-18 4ozn:B
29 4ozn:A 116 108 0.4948 0.4138 0.4444 8.04e-17 4ozj:A, 4ozn:C
30 4rx6:B 115 111 0.4124 0.3478 0.3604 1.16e-14 4r25:A, 4rx6:A, 4rx6:D
31 6cxs:B 599 40 0.1340 0.0217 0.3250 1.6 6cxs:A
32 5kf0:A 480 37 0.1546 0.0312 0.4054 2.1 5jry:A, 5kf0:B, 5kf0:C, 5kf0:D
33 3lvt:A 833 52 0.1753 0.0204 0.3269 4.9
34 4wk1:A 92 86 0.2474 0.2609 0.2791 5.3
35 3w15:A 336 26 0.0928 0.0268 0.3462 5.7
36 8y7g:B 543 59 0.1546 0.0276 0.2542 6.6 8y7g:A
37 4yd9:A 1656 57 0.1340 0.0079 0.2281 6.8 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
38 7oj2:A 353 37 0.1649 0.0453 0.4324 7.4
39 8wm6:k 180 32 0.1340 0.0722 0.4062 8.3 8wmj:k, 8wmv:k, 8wmw:k
40 3t0q:A 304 55 0.1649 0.0526 0.2909 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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