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BioLiP
>protein
MKILVAVKQTAALEEDFEIREDGMDVDEDFMMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKG
ADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVI
RRELEGGMLQEVEINCPAVLTIQLGINKPRYASTKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIPEKGRATMIEGTIS
EQAAKIIQIINEFK

The query sequence (length=254) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1o96:A 261 262 0.9961 0.9693 0.9656 0.0 3clr:C, 3cls:C, 3clt:C, 3clu:C, 1o94:C, 1o94:E, 1o95:C, 1o95:E, 1o96:C, 1o96:E, 1o96:Q, 1o97:C
2 1efp:B 246 256 0.3307 0.3415 0.3281 2.73e-33 1efp:D
3 6fah:B 262 263 0.3504 0.3397 0.3384 2.19e-27 6fah:F
4 2a1u:B 252 217 0.2717 0.2738 0.3180 8.93e-27 2a1t:S, 1efv:B, 1t9g:S
5 4kpu:B 263 267 0.2835 0.2738 0.2697 1.19e-17 4l2i:B
6 5ol2:B 260 259 0.2598 0.2538 0.2548 1.02e-16 5ol2:E
7 7koe:A 282 236 0.2717 0.2447 0.2924 1.17e-14 7koe:E
8 7qh2:B 265 268 0.2756 0.2642 0.2612 3.58e-13 7qh2:E
9 5ow0:B 251 106 0.1339 0.1355 0.3208 2.74e-04
10 5ylz:T 344 147 0.1181 0.0872 0.2041 0.90
11 8r56:D 673 111 0.1181 0.0446 0.2703 1.4 8r56:A, 8r56:B, 8r56:C
12 1cjx:A 352 95 0.1063 0.0767 0.2842 2.0 1cjx:D, 1cjx:B, 1cjx:C, 7x8e:A, 7x8e:B, 7x8e:C, 7x8e:D, 7x8e:E, 7x8e:F, 7x8e:G, 7x8e:H, 7xnt:G, 7xnt:A, 7xnt:B
13 7xnt:C 320 95 0.1063 0.0844 0.2842 2.6
14 7trr:A 219 23 0.0354 0.0411 0.3913 4.0
15 8br4:A 339 153 0.1693 0.1268 0.2810 4.3 8br4:B, 8br4:C, 8br4:D, 8br4:E, 8br4:F, 8br4:G, 8br4:H, 8br4:I, 8br4:J, 8br4:K, 8br4:L, 8br4:M, 8br4:N, 8br4:O, 8br4:P
16 5fxs:A 308 101 0.1024 0.0844 0.2574 6.3 4d2r:A, 3d94:A, 3f5p:A, 3f5p:B, 3f5p:C, 3f5p:D, 3f5p:E, 3f5p:F, 3f5p:G, 3f5p:H, 3f5p:I, 3f5p:J, 3f5p:K, 3f5p:M, 3f5p:L, 3f5p:R, 3f5p:S, 3f5p:T, 5fxq:A, 5fxr:A, 5hzn:A, 5hzn:B, 5hzn:C, 5hzn:D, 5hzn:E, 5hzn:F, 5hzn:G, 5hzn:H, 3i81:A, 1jqh:A, 1jqh:B, 1jqh:C, 1k3a:A, 3lvp:A, 3lvp:B, 3lvp:C, 3lvp:D, 3lw0:A, 3lw0:D, 3lw0:B, 3lw0:C, 3nw5:A, 3nw6:A, 3nw7:A, 3o23:A, 2oj9:A, 8pyi:AAA, 8pyi:BBB, 8pyi:CCC, 8pyi:DDD, 8pyi:EEE, 8pyi:FFF, 8pyi:GGG, 8pyi:HHH, 8pyj:AAA, 8pyk:AAA, 8pyl:AAA, 8pym:AAA, 8pyn:AAA, 3qqu:A, 3qqu:B, 3qqu:C, 3qqu:D, 2zm3:A, 2zm3:B, 2zm3:C, 2zm3:D
17 6sga:FS 277 50 0.0394 0.0361 0.2000 8.1 6sga:FQ, 6sga:FR, 6sga:FU, 6sgb:FQ, 6sgb:FR, 6sgb:FU

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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