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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKIATLNKGKETKYFNGYPLIEEEDIYSQDHLKEGDIFQIVTDKSQYVATAYVGRQHKGLGWVLTYDKAQEINTAFFVKL
FNTALAERDYYFNIDGTNAFRLFNAEGDGVGGLTIDNYDGHLLIQWYSKGIYKFKYAILEAVRKVFDYKSIYEKVRFSGG
FVEGDAPEFPIVIEENFTFYNVDLEDGLMTGIFLDQKEVRKKLRGQYAKERHVLNLFSYTGAFSVIAASEASSTTSVDLA
NRSRSLTEENFGLNAIDPKSQYIYVMDTFDFYKYAARHGHSYDTIVIDPPSFARNKKRTFSVQKDYDKLINGALNILSSE
GTLLLCTNASVYPLKQFKNTIKKTLEESGVDYELTEVMGLPKDFKTHPHYKPSKYLKAVFVNIRHLEHHH

The query sequence (length=390) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3vse:A 390 390 0.9872 0.9872 0.9872 0.0 3vse:B, 3vse:C, 3vse:D
2 3ldf:A 380 377 0.4051 0.4158 0.4191 5.44e-83
3 2cww:B 382 326 0.2333 0.2382 0.2791 3.68e-26 2cww:A
4 4dmg:A 385 399 0.2385 0.2416 0.2331 4.79e-21 4dmg:B
5 3v97:B 641 237 0.1821 0.1108 0.2996 2.90e-19 3v8v:B
6 3v97:A 667 237 0.1821 0.1064 0.2996 1.68e-18 3v8v:A
7 2igt:A 313 144 0.1077 0.1342 0.2917 4.05e-06 2igt:B, 2igt:C
8 3j6b:M 151 69 0.0487 0.1258 0.2754 2.4 5mrc:M, 5mre:M, 5mrf:M
9 5ee3:B 364 63 0.0462 0.0495 0.2857 3.1 5ee3:A, 5ee9:A
10 5z7x:A 270 49 0.0410 0.0593 0.3265 3.2
11 6sc2:B 3930 63 0.0487 0.0048 0.3016 3.6 6rla:A, 6rla:B, 6sc2:A
12 6sc2:B 3930 40 0.0410 0.0041 0.4000 7.4 6rla:A, 6rla:B, 6sc2:A
13 8xme:A 1176 49 0.0410 0.0136 0.3265 4.8 7eu0:A, 8xmb:A, 8xmc:A, 8xmd:A
14 3d0n:A 263 133 0.0769 0.1141 0.2256 5.7 3czv:A, 3czv:B, 3d0n:B, 3da2:A, 3da2:B, 5e2n:A, 5e2n:B, 6g5u:B, 6g5u:A, 4hu1:B, 4hu1:A, 4knm:A, 4knm:B, 4knn:B, 4knn:A, 5lla:B, 5lla:A, 5lln:B, 5lln:A, 5ogj:B, 5ogj:A, 5ohh:B, 5ohh:A, 4qiz:A, 4qiz:B, 4qjp:B, 4qjp:A, 4qjx:A, 4qsj:B, 4qsj:A
15 5cbk:A 271 49 0.0410 0.0590 0.3265 6.7 8dvc:A, 8dvc:B, 8dvc:C, 8dvc:D, 8dvc:E
16 4rh7:A 3005 40 0.0410 0.0053 0.4000 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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