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BioLiP
>protein
MKGMSKMPQVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGR

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1bdt:B 53 50 0.9800 0.9245 0.9800 1.27e-30 1bdt:A, 1bdt:C, 1bdt:D, 1bdv:A, 1bdv:B, 1bdv:C, 1bdv:D, 1par:A, 1par:B, 1par:C, 1par:D
2 3qoq:A 50 38 0.2800 0.2800 0.3684 0.055 3qoq:B, 3qoq:C, 3qoq:D
3 6ejp:D 90 32 0.2000 0.1111 0.3125 1.9 6ejp:C
4 6q7i:A 770 21 0.1800 0.0117 0.4286 2.5 6q7j:A, 6q7j:B
5 5d3m:A 280 19 0.2000 0.0357 0.5263 3.7 8bmp:A, 8bmq:A, 8bms:A, 5d3m:E
6 2p5v:G 158 39 0.3000 0.0949 0.3846 3.7 2p5v:A, 2p5v:B, 2p5v:C, 2p5v:E, 2p5v:D, 2p5v:F, 2p5v:H, 2p6s:A, 2p6s:G, 2p6s:B, 2p6s:D, 2p6s:C, 2p6s:F, 2p6s:E, 2p6s:H, 2p6t:A, 2p6t:G, 2p6t:B, 2p6t:D, 2p6t:C, 2p6t:F, 2p6t:E, 2p6t:H
7 7dsx:B 509 43 0.2600 0.0255 0.3023 5.8 7dsv:A, 7dsv:B, 7dsw:B, 7dsw:A, 7dsx:A
8 7vg5:A 204 45 0.2800 0.0686 0.3111 7.1 7vg5:B
9 3e78:A 365 22 0.1800 0.0247 0.4091 8.1 3e79:A, 3eki:A
10 7mvz:A 1641 29 0.1800 0.0055 0.3103 8.4 7tbi:F1, 7tbi:F2, 7tbj:F1, 7tbj:F2, 7tbk:F1, 7tbk:F2, 7tbl:F1, 7tbl:F2, 7tbm:F1, 7tbm:F2
11 7wb0:A 797 33 0.2000 0.0125 0.3030 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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