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BioLiP
>protein
MKFLELNKKRHATKHFTDKLVDPKDVRTAIEIATLAPSAHNSQPWKFVVVREKNAELAKLAYGSNFEQVSSAPVTIALFT
DTDLAKRARKIARVGGANNFSEEQLQYFMKNLPAEFARYSEQQVSDYLALNAGLVAMNLVLALTDQGIGSNIILGFDKSK
VNEVLEIEDRFRPELLITVGYTDEKLEPSYRLPVDEIIEKR

The query sequence (length=201) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2b67:A 201 201 1.0000 1.0000 1.0000 2.47e-149 2b67:B, 2b67:C, 2b67:D
2 3ge6:A 210 207 0.3035 0.2905 0.2947 1.96e-21 3ge6:B
3 3gbh:B 213 202 0.2786 0.2629 0.2772 1.45e-17 3gbh:A, 3gbh:C, 3gbh:D
4 4dn2:A 191 200 0.2935 0.3089 0.2950 7.16e-17 4dn2:B
5 3bem:B 210 200 0.2836 0.2714 0.2850 1.07e-15 3bem:A
6 3ge5:A 176 181 0.2090 0.2386 0.2320 1.62e-13 3ge5:B
7 1nox:A 200 193 0.2786 0.2800 0.2902 4.74e-13
8 4eo3:A 321 196 0.2836 0.1776 0.2908 5.36e-12 4eo3:B
9 3gag:A 206 208 0.3035 0.2961 0.2933 1.20e-11 3gag:B, 3gag:C, 3gag:D
10 3koq:A 173 205 0.2289 0.2659 0.2244 2.68e-11 3h4o:A, 3koq:B, 3koq:C, 3koq:D
11 4g8s:A 182 200 0.2786 0.3077 0.2800 3.50e-11 4g8s:B
12 8cqt:B 164 182 0.2438 0.2988 0.2692 5.04e-11 8cqt:A
13 3qdl:A 178 177 0.2388 0.2697 0.2712 4.57e-10 3qdl:B, 3qdl:C, 3qdl:D
14 7s14:B 223 217 0.2388 0.2152 0.2212 3.36e-09 7ldq:A, 7rzl:A, 7rzl:B, 7rzp:A, 7rzp:B, 7s14:A, 7s14:C, 7s14:D, 7s1a:A, 7s1a:B, 7t2z:A, 7t2z:B, 7t33:A, 7t33:B
15 4qlx:A 217 180 0.2488 0.2304 0.2778 1.17e-08 4qlx:B, 4qly:A, 4qly:B, 4qly:C, 4qly:D
16 6pz0:A 185 198 0.2289 0.2486 0.2323 1.81e-08 6pz0:B, 6q1b:A, 6q1b:B, 6q1l:A, 6q1l:B, 6tyk:A, 6tyk:B
17 2wzv:B 223 197 0.2786 0.2511 0.2843 1.86e-07 2wzv:A, 2wzw:A, 2wzw:B
18 8qyg:B 225 207 0.2587 0.2311 0.2512 1.88e-06 8q5g:A, 8q5g:B, 8qyg:A
19 7jh4:A 223 191 0.2139 0.1928 0.2251 2.85e-06 7jh4:B, 7jh4:C, 7jh4:D, 7jh4:E
20 3e39:A 175 81 0.1244 0.1429 0.3086 4.49e-06 3e39:B
21 3gfa:A 197 207 0.2587 0.2640 0.2512 5.84e-06 3gfa:B
22 5j6c:A 173 187 0.2040 0.2370 0.2193 6.36e-06 5j6c:B
23 5j8d:A 216 206 0.2488 0.2315 0.2427 3.35e-05 5j8d:B, 5j8d:C, 5j8d:D, 5j8g:A, 5j8g:B, 5j8g:C, 5j8g:D, 1kqb:A, 1kqb:B, 1kqb:C, 1kqb:D, 1kqc:A, 1kqc:B, 1kqc:C, 1kqc:D, 1kqd:A, 1kqd:B, 1kqd:C, 1kqd:D, 1nec:A, 1nec:B, 1nec:C, 1nec:D
24 1ds7:A 217 67 0.1194 0.1106 0.3582 2.74e-04 8c5e:A, 8c5e:B, 8c5f:A, 8c5f:B, 8c5p:A, 8c5p:B, 8ccv:A, 8ccv:B, 8cj0:A, 8cj0:B, 1ds7:B, 1icr:A, 1icr:B, 1icu:A, 1icu:B, 1icu:C, 1icu:D, 1icv:A, 1icv:B, 1icv:C, 1icv:D, 1idt:A, 1idt:B, 8og3:A, 8og3:B, 1oo5:A, 1oo5:B, 1oo6:A, 1oo6:B, 1oon:A, 1oon:B, 1ooq:A, 1ooq:B, 8qes:A, 8qes:C, 8qes:B, 8qes:D, 8qpo:A, 8qpo:B, 8qpo:C, 8qpo:G, 8qpo:D, 8qpo:E, 8qpo:F, 8qpo:H, 3x21:A, 3x21:B, 3x21:C, 3x21:D, 3x21:E, 3x21:F, 3x21:G, 3x21:H, 3x21:I, 3x21:J, 3x22:A, 3x22:B, 7x32:A, 7x32:C, 7x32:B, 7x32:H, 7x32:D, 7x32:F, 7x32:E, 7x32:G, 7xww:B, 7xww:A, 7xww:H, 7xww:I, 1yki:A, 1yki:B, 1yki:C, 1yki:D, 1ylr:A, 1ylr:B, 1ylu:A, 1ylu:B
25 5j62:B 209 150 0.1841 0.1770 0.2467 2.78e-04 5j62:A
26 2h0u:A 196 205 0.2388 0.2449 0.2341 3.43e-04
27 3eo8:A 219 46 0.0796 0.0731 0.3478 0.001 3eo8:B, 3eo8:C, 3eo8:D, 3eo8:E, 3eo8:F
28 2hay:D 222 174 0.2139 0.1937 0.2471 0.002 2hay:A, 2hay:B, 2hay:C
29 7dp0:A 223 42 0.0896 0.0807 0.4286 0.002 7dp0:B, 7dp1:A, 7dp1:B, 7dp2:A, 7dp2:B
30 3gr3:A 226 44 0.0796 0.0708 0.3636 0.002 3gr3:B
31 3m5k:A 168 198 0.2189 0.2619 0.2222 0.002 3m5k:B
32 3e10:B 167 55 0.0995 0.1198 0.3636 0.002 3e10:A
33 5ko7:B 200 192 0.2040 0.2050 0.2135 0.003
34 4ttb:A 189 86 0.1144 0.1217 0.2674 0.003 4ttb:B
35 2isj:A 219 195 0.2338 0.2146 0.2410 0.003 2isj:B, 2isj:C, 2isj:D, 2isj:E, 2isj:F, 2isj:G, 2isj:H, 2isk:A, 2isk:B, 2isk:C, 2isk:D, 2isk:E, 2isk:F, 2isk:G, 2isk:H, 2isl:A, 2isl:B, 2isl:C, 2isl:D, 2isl:E, 2isl:F, 2isl:G, 2isl:H
36 6wt2:A 221 45 0.0746 0.0679 0.3333 0.003 6wt2:B, 6wt2:C, 6wt2:D
37 2i7h:A 187 198 0.2189 0.2353 0.2222 0.003 2i7h:B, 2i7h:C, 2i7h:D
38 3gb5:A 185 53 0.0846 0.0919 0.3208 0.004 3to0:A, 3to0:B
39 2fre:A 200 180 0.1940 0.1950 0.2167 0.004 2fre:B
40 8dor:A 217 216 0.2587 0.2396 0.2407 0.005 8dor:B, 8dor:C, 8dor:D
41 4ttc:A 220 55 0.0846 0.0773 0.3091 0.007 4ttc:B, 4ttc:C, 4ttc:D, 4ttc:E, 4ttc:F, 5yak:A, 5yak:F, 5yak:B, 5yak:C, 5yak:D, 5yak:E
42 3tnz:A 222 54 0.0846 0.0766 0.3148 0.012 3gfd:A, 3gfd:B, 3gh8:A, 3gh8:B, 3gh8:C, 3gh8:D, 3gh8:E, 3gh8:F, 3gh8:G, 3gh8:H, 3tnz:B
43 6czp:A 219 201 0.2239 0.2055 0.2239 0.017 6czp:B, 6czp:C, 6czp:D, 6czp:E, 6czp:F, 6czp:G, 6czp:H, 7uwt:A, 7uwt:B
44 5ko8:B 218 205 0.2189 0.2018 0.2146 0.020 5ko7:A, 5ko8:A, 5krd:A, 5krd:B
45 3n2s:A 248 188 0.2338 0.1895 0.2500 0.025 3n2s:B, 3n2s:C, 3n2s:D
46 8uc3:A 180 48 0.0846 0.0944 0.3542 0.030 8uc3:B
47 2ymv:A 327 32 0.0597 0.0367 0.3750 0.044
48 3eof:A 248 201 0.2388 0.1935 0.2388 0.051 3eof:B
49 1v5y:A 217 47 0.0846 0.0783 0.3617 0.062 1v5y:B, 1v5z:A, 1v5z:B, 1vfr:A, 1vfr:B
50 3eo7:A 487 63 0.1045 0.0431 0.3333 0.10
51 3kwk:A 168 72 0.0846 0.1012 0.2361 0.16
52 3pxv:B 189 157 0.1841 0.1958 0.2357 0.25 3pxv:A, 3pxv:C, 3pxv:D
53 3k6h:A 191 172 0.1990 0.2094 0.2326 0.39 3k6h:B
54 4xoq:A 204 199 0.2289 0.2255 0.2312 0.81 4xoo:A, 4xoo:B, 4xoo:C, 4xoo:D, 4xoq:B, 4xoq:C, 4xoq:D
55 1zch:A 249 79 0.1095 0.0884 0.2785 0.81
56 4bn9:A 191 47 0.0697 0.0733 0.2979 1.3 4bn6:A, 4bn7:A, 4bn8:A, 4bnb:A, 2wqf:A
57 5uid:A 367 34 0.0647 0.0354 0.3824 2.6 5uid:D
58 3ek3:A 187 49 0.0647 0.0695 0.2653 3.3
59 8bxl:B 590 34 0.0498 0.0169 0.2941 4.5 8bxl:C, 8bxl:D, 8bxl:A, 8bxl:F, 8bxl:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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