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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKFGIEFVPSDPALKIAYYAKLSEQQGFDHVWITDHYNNRDVYSTLTVLALNTNSIKIGPGVTNSYTRNPAITASSIASI
AEISGGRAVLGLGPGDKATFDAMGIAWKKPLATTKEAIQAIRDFISGKKVSMDGEMIKFAGAKLAFKAGNIPIYMGAQGP
KMLELAGEIADGVLINASHPKDFEVAVEQIKKGAEKAGRDPSEVDVTAYACFSIDKDPVKAVNAAKVVVAFIVAGSPDLV
LERHGIPVEAKSQIGAAIAKGDFGALMGGLVTPQMIEAFSICGTPDDCMKRIKDLEAIGVTQIVAGSPIGPAKEKAIKLI
GKEIIAK

The query sequence (length=327) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1z69:A 327 327 1.0000 1.0000 1.0000 0.0 1z69:B, 1z69:C, 1z69:D
2 8qpl:A 331 327 0.6239 0.6163 0.6239 1.83e-143 8qpl:B
3 1ezw:A 347 342 0.5566 0.5245 0.5322 3.85e-121
4 3b4y:A 332 324 0.2232 0.2199 0.2253 1.52e-18 3b4y:B
5 1rhc:A 330 301 0.2294 0.2273 0.2492 1.20e-17
6 3fgc:A 349 341 0.2294 0.2149 0.2199 3.76e-09
7 7bip:B 329 238 0.1835 0.1824 0.2521 6.72e-06
8 5wan:A 341 203 0.1529 0.1466 0.2463 4.75e-04 6sgg:AAA, 6sgl:AAA, 6sgm:AAA, 6sgn:AAA, 6tee:AAA, 6tef:AAA, 6teg:AAA
9 3td9:A 350 68 0.0581 0.0543 0.2794 0.12
10 5aec:A 364 46 0.0520 0.0467 0.3696 0.70 5aec:B, 4uwm:A, 4uwm:B
11 3b9o:A 433 64 0.0520 0.0393 0.2656 0.92 3b9o:B
12 6s1m:A 1010 46 0.0459 0.0149 0.3261 3.5 6s1n:A, 6s1o:A, 6tny:A, 6tnz:A
13 6r6h:E 310 111 0.0826 0.0871 0.2432 6.2 4d10:E, 4d10:M, 4d18:E, 4d18:M, 8h38:E, 8h3a:E, 8h3f:E, 5jog:A, 5joh:A, 5m5q:A, 6r7i:E, 4wsn:E, 4wsn:M, 4wsn:U, 4wsn:c, 4wsn:k, 4wsn:s
14 5mss:A 717 61 0.0520 0.0237 0.2787 6.7 5mst:A, 5mst:B, 5msw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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