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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEA
VFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKE
NYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCY
LGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIH
AKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNP
LFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI

The query sequence (length=467) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8oz6:B 473 473 1.0000 0.9873 0.9873 0.0 8ffi:B, 8ffi:F, 8ffi:L, 8ffi:N, 8i87:F, 8i87:T, 8i87:B, 8i87:D, 8i88:B, 8j7s:A, 8j7s:E, 8j7s:I, 8j7s:M, 8jr8:A, 8jr8:C, 8oz6:D, 8oz6:F, 8oz6:H, 8ozd:B, 8ozd:D, 8oze:F, 8oze:H, 8ozf:B, 8ozf:E, 8ozf:G, 8ozf:M, 8ozg:B, 8ozg:E, 8ozg:G, 8ozg:M, 8ozi:B, 8ozi:D, 8ozi:F, 8ozi:H, 8sp0:B, 8sp0:F, 8sp3:B, 8sp3:F, 8spo:B, 8spo:F, 8spo:L, 8spo:N, 8squ:B
2 8isz:A 465 467 0.8201 0.8237 0.8201 0.0 8it0:A, 8it0:E, 8it1:I, 8it1:M, 8it1:A, 8it1:E, 8j8h:A, 8j9g:A, 8j9p:A, 8j9p:C, 8jay:A, 8jay:C, 8jay:I, 8jay:M, 8k9g:A, 8k9g:E, 8u72:C, 8u72:E, 8u72:I, 8u72:G
3 8u7b:C 507 507 0.8244 0.7594 0.7594 0.0
4 8qlp:B 452 467 0.7709 0.7965 0.7709 0.0 8qlp:F, 8qlp:J, 8qlp:N
5 8k34:B 434 465 0.7709 0.8295 0.7742 0.0 8ifl:B, 8ifl:G, 8ifl:K, 8ifl:O, 8ifm:B, 8ifm:G, 8ifm:K, 8ifm:O
6 8ifk:B 409 467 0.7238 0.8264 0.7238 0.0
7 8in8:C 470 495 0.2527 0.2511 0.2384 1.52e-26 8jl0:B, 8k87:A, 8k87:F, 8k88:A
8 6qzk:A 746 286 0.1649 0.1032 0.2692 2.97e-11
9 1yvu:A 682 290 0.1306 0.0894 0.2103 0.014
10 2f8s:A 704 290 0.1306 0.0866 0.2103 0.014 2f8t:A
11 2bgg:B 394 372 0.1606 0.1904 0.2016 1.6 2w42:B
12 3zok:A 365 31 0.0321 0.0411 0.4839 2.5 3zok:B, 3zok:C, 3zok:D
13 5m1i:A 539 67 0.0407 0.0353 0.2836 2.7 6gta:A, 6gvd:A, 6gwf:A, 6gwg:A, 6gx8:A, 5m0x:A, 5m12:A, 5m16:A
14 8any:F 252 45 0.0343 0.0635 0.3556 6.9 7a5f:F3, 7a5g:F3, 7a5h:F, 7a5i:F3, 7a5j:F, 7a5k:F3, 6i9r:F, 3j7y:F, 3j9m:F, 8k2a:LD, 8k2b:LD, 7l08:F, 7l20:F, 6nu2:F, 6nu3:F, 7o9k:F, 7o9m:F, 7odr:F, 7ods:F, 7odt:F, 7of0:F, 7of2:F, 7of3:F, 7of4:F, 7of5:F, 7of6:F, 7of7:F, 7og4:XF, 7oi6:F, 7oi7:F, 7oi8:F, 7oi9:F, 7oia:F, 7oib:F, 7oic:F, 7oid:F, 7oie:F, 8oir:BN, 8oit:BN, 5ool:F, 5oom:F, 7pd3:F, 8pk0:F, 7po4:F, 7qh6:F, 7qh7:F, 7qi4:F, 7qi5:F, 7qi6:F, 8qsj:F, 8qu1:F, 8qu5:F, 6vlz:F, 6vmi:F, 8xt0:LD, 8xt1:LD, 8xt2:LD, 8xt3:LD, 6zm5:F, 6zm6:F, 6zs9:XF, 6zsa:XF, 6zsb:XF, 6zsc:XF, 6zsd:XF, 6zse:XF, 6zsg:XF
15 1bdb:A 267 89 0.0471 0.0824 0.2472 7.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218