Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHR
IRKERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRSKLKVKDLVFVDDSVKRYK

The query sequence (length=155) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3qbc:B 161 158 1.0000 0.9627 0.9810 5.11e-111 4ad6:A, 4ad6:B, 4crj:A, 4cwb:A, 4cyu:A, 4cyu:B, 4cyu:C, 4cyu:D, 5etq:A, 5etq:B, 5etr:B, 5etr:A, 5ets:B, 5ets:A, 5ett:B, 5ett:A, 5etv:A, 3qbc:A
2 8sk1:A 162 144 0.4387 0.4198 0.4722 1.31e-39 8sk1:B
3 1cbk:A 160 142 0.3613 0.3500 0.3944 4.26e-32 1cbk:B
4 5etl:D 160 143 0.3677 0.3563 0.3986 2.38e-30 6an4:A, 6an6:A, 6an6:B, 1dy3:A, 1eqm:A, 5etk:A, 5etl:A, 5etl:B, 5etl:C, 5etm:A, 5etn:A, 5eto:A, 5etp:A, 1ex8:A, 4f7v:A, 1f9h:A, 1g4c:B, 3hd1:A, 3hd2:A, 1hq2:A, 3hsd:A, 3hsd:B, 3hsg:A, 3ht0:A, 3ilj:A, 3ilo:A, 3ip0:A, 7kdo:A, 7kdr:A, 3kuh:A, 4m5g:A, 4m5h:A, 4m5i:A, 4m5j:A, 4m5k:A, 4m5l:A, 4m5m:A, 4m5n:A, 4m5n:B, 1q0n:A, 1rao:A, 1rb0:A, 1rtz:A, 1ru1:A, 1ru1:B, 1ru2:A, 8sif:A, 1tmj:A, 1tmm:A, 1tmm:B, 3ud5:A, 3ude:A, 3udv:A
5 2qx0:A 159 139 0.3677 0.3585 0.4101 2.56e-29 2qx0:B
6 2bmb:A 513 139 0.3613 0.1092 0.4029 7.34e-22
7 3mco:A 397 143 0.2645 0.1033 0.2867 2.58e-11 3mcn:B, 3mco:B
8 8sl9:A 422 144 0.2710 0.0995 0.2917 3.48e-11 4pzv:A
9 3mcm:A 368 136 0.2258 0.0951 0.2574 7.34e-08 3mcn:A
10 6mdw:A 185 47 0.0968 0.0811 0.3191 3.9 6mdx:A
11 3j94:F 466 41 0.0903 0.0300 0.3415 4.0
12 3j94:A 490 41 0.0903 0.0286 0.3415 4.1 3j94:B, 3j94:C, 3j94:D, 3j94:E, 3j95:B, 3j95:C, 3j95:D, 3j95:E, 6mdm:F
13 6mdn:F 449 41 0.0903 0.0312 0.3415 5.0
14 6mdm:D 713 41 0.0903 0.0196 0.3415 5.5 1d2n:A, 6ip2:B, 6ip2:C, 6ip2:D, 6ip2:E, 6ip2:F, 6ip2:A, 6mdm:A, 6mdm:B, 6mdm:C, 6mdm:E, 6mdn:A, 6mdn:B, 6mdn:C, 6mdn:D, 6mdn:E, 6mdo:A, 6mdo:B, 6mdo:C, 6mdo:D, 6mdo:E, 6mdo:F, 6mdp:A, 6mdp:B, 6mdp:C, 6mdp:D, 6mdp:E, 6mdp:F, 1nsf:A
15 4a80:A 159 64 0.1161 0.1132 0.2812 8.9 4a81:A, 4a83:A, 4a84:A, 4a85:A, 4a86:A, 4a87:A, 4a8g:A, 4a8v:A, 1fm4:A, 4mns:A, 4qip:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218