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BioLiP
>protein
MIPPPEKVRMNSVNFKNILQWEVPAFPKTQLTFTAQYESYRSFQDHCKRTASTQCDFSHLSKYGDYTVRVRAELADEHSE
WVQVTFCPVEDTIIGPPEMQIESLAESLHLRFSAPQIENEPETWTLKNIYDSWAYRVQYWKQGTNEKFQVVSPYDSEVLR
NLEPWTTYCIQVQGFLLDQQRTGEWSEPICERTGN

The query sequence (length=195) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6weo:O 196 195 1.0000 0.9949 1.0000 1.58e-148 6weo:K, 6weo:C
2 6e3k:E 213 217 0.3179 0.2911 0.2857 1.03e-15 6e3k:I, 6e3l:E, 6e3l:I, 5eh1:A
3 3dgc:R 202 145 0.1692 0.1634 0.2276 0.005
4 6weo:7 201 146 0.1590 0.1542 0.2123 0.022 6weo:F, 6weo:M, 6weo:V
5 7o31:H 221 57 0.0769 0.0679 0.2632 0.25 7ucx:H
6 6u42:5H 135 57 0.0974 0.1407 0.3333 0.43
7 6uag:A 97 96 0.1282 0.2577 0.2604 0.94 6uag:B, 6uag:C, 6uag:D, 6uag:E, 6uag:F, 6ug4:A, 6ug4:B, 6ug4:C, 6ug4:D, 6ug4:E, 6ug4:F
8 1i8i:B 119 55 0.0769 0.1261 0.2727 1.6 1i8k:B
9 1eba:A 212 73 0.1077 0.0991 0.2877 1.9 1eba:B, 1ebp:A, 1ebp:B
10 2ivf:C 214 52 0.0821 0.0748 0.3077 3.1
11 2p6r:A 683 78 0.1231 0.0351 0.3077 6.0
12 7bvd:A 499 135 0.1590 0.0621 0.2296 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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