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BioLiP
>protein
MILLDTNVISEPLRPQPNERVVAWLDSLILEDVYLSAITVAELRLGVALLLNGKKKNVLHERLEQSILPLFAGRILPFDE
PVAAIYAQIRSYAKTHGKEIAAADGYIAATAKQHSLTVATRDTGSFFAADVAVFNPWHL

The query sequence (length=139) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2bsq:A 143 139 0.9784 0.9510 0.9784 2.32e-99 2h1c:A, 2h1o:A
2 8iuf:1A 352 44 0.1079 0.0426 0.3409 0.17 8j9h:1A, 8j9i:1A, 8j9j:1A
3 7xjp:B 509 44 0.1151 0.0314 0.3636 2.0
4 7tbj:A5 1276 105 0.2086 0.0227 0.2762 3.5 5hax:A, 5hb0:B, 5hb0:C, 5hb0:A, 7tbi:A1, 7tbi:A2, 7tbi:A3, 7tbi:A4, 7tbj:A1, 7tbj:A3, 7tbj:A6, 7tbk:A1, 7tbk:A3, 7tbk:A5, 7tbk:A6, 7tbl:A1, 7tbl:A3, 7tbl:A5, 7tbl:A6, 7tbm:A1, 7tbm:A3, 7tbm:A5, 7tbm:A6
5 4rwn:A 349 43 0.1079 0.0430 0.3488 4.3 4rwo:A, 4rwp:A
6 1gxc:A 116 34 0.0863 0.1034 0.3529 5.0 1gxc:D, 1gxc:G, 1gxc:J
7 4uqv:G 429 53 0.1223 0.0396 0.3208 7.3 4uqv:A, 4uqv:B, 4uqv:C, 4uqv:D, 4uqv:E, 4uqv:F, 4uqv:H, 4uqv:I, 4uqv:J, 4uqv:K, 4uqv:L
8 3qjj:A 243 50 0.1151 0.0658 0.3200 9.1 3qjj:B, 3qjl:A, 3qjl:B, 3qjp:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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