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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MIKEFSDPLYGFVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKEKELVKLA
GLLHDLGHPPFSHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSHEDIERLVRITLGKPEDEEEKLLSEIITGEFGS
DRMDYLRRDAYFCGVSYGFFDYDRLISTLRVYENKVVVDESGLRALENFLISRYFMYVQVYFHKVVRILSIHLVEFLKKL
ISQEDFTDINNFLRLNDAFVISELFKRKAFREDFERIFQRKHFKTLLSTENYEKFSETKERLLEKFPQEKVRFDEVEKEV
YGGNIYVLSSEGLKKAHELSPLIASLKPIKLYRIYVDRQLWEKARSELK

The query sequence (length=369) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2hek:A 369 369 1.0000 1.0000 1.0000 0.0 2hek:B
2 4lrl:C 455 267 0.2737 0.2220 0.3783 6.16e-49 3irh:A, 3irh:B, 3irh:C, 3irh:D, 4lrl:A, 4lrl:B, 4lrl:D, 2o6i:A, 2o6i:B
3 2q14:C 406 240 0.2304 0.2094 0.3542 4.15e-41 2q14:A, 2q14:B, 2q14:D, 2q14:E, 2q14:F, 2q14:G, 2q14:H
4 5ao4:C 389 349 0.2954 0.2802 0.3123 1.14e-31 5ao4:D, 6u6x:B
5 6u6x:C 376 349 0.2873 0.2819 0.3037 5.94e-30
6 6brh:B 502 378 0.2900 0.2131 0.2831 1.09e-29 6brg:A, 6brg:B, 6brg:C, 6brg:D, 6brh:A, 6brk:A
7 4mz7:B 493 274 0.2385 0.1785 0.3212 5.90e-29 7a5y:A, 7a5y:B, 7a5y:C, 7a5y:D, 7a5y:E, 7a5y:F, 7a5y:G, 7a5y:H, 5ao0:A, 5ao0:B, 5ao1:A, 5ao1:B, 5ao1:C, 5ao1:D, 5ao2:A, 5ao2:B, 5ao2:C, 5ao2:D, 5ao3:A, 5ao3:C, 5ao3:B, 5ao3:D, 5ao4:A, 5ao4:B, 4bzb:A, 4bzb:C, 4bzb:D, 4bzb:B, 4bzc:A, 4bzc:C, 4bzc:D, 4bzc:B, 6cm2:D, 6cm2:A, 6cm2:B, 6cm2:C, 8d94:A, 8d94:D, 8d94:B, 8d94:C, 8d9j:A, 8d9j:D, 8d9j:B, 8d9j:C, 6dw3:D, 6dw3:C, 6dw3:B, 6dw3:A, 6dw4:D, 6dw4:C, 6dw4:B, 6dw4:A, 6dw5:A, 6dw5:D, 6dw5:B, 6dw5:C, 6dw7:A, 6dw7:B, 6dw7:C, 6dw7:D, 6dwd:D, 6dwd:A, 6dwd:C, 6dwd:B, 6dwj:D, 6dwj:A, 6dwj:C, 6dwj:B, 6dwk:A, 6dwk:D, 6dwk:B, 6dwk:C, 8gb1:A, 8gb1:B, 8gb1:C, 8gb1:D, 8gb2:D, 8gb2:A, 8gb2:B, 8gb2:C, 7ltt:A, 7ltt:D, 7ltt:B, 7ltt:C, 7lu5:A, 7lu5:D, 7lu5:C, 7lu5:B, 7lu5:E, 7lu5:H, 7lu5:F, 7lu5:G, 7lu5:I, 7lu5:L, 7lu5:K, 7lu5:J, 7lu5:M, 7lu5:P, 7lu5:O, 7lu5:N, 4mz7:A, 4q7h:A, 4q7h:B, 4q7h:C, 4q7h:D, 4qfx:A, 4qfx:D, 4qfx:B, 4qfx:C, 4qfy:A, 4qfy:D, 4qfy:B, 4qfy:C, 4qfz:A, 4qfz:D, 4qfz:B, 4qfz:C, 4qg0:A, 4qg0:D, 4qg0:B, 4qg0:C, 4qg1:A, 4qg1:B, 4qg1:C, 4qg1:D, 4qg2:A, 4qg2:D, 4qg2:B, 4qg2:C, 4qg4:A, 4qg4:D, 4qg4:B, 4qg4:C, 8qxj:A, 8qxj:B, 8qxj:C, 8qxj:D, 8qxk:A, 8qxk:B, 8qxk:C, 8qxk:D, 8qxl:A, 8qxl:B, 8qxl:C, 8qxl:D, 8qxm:A, 8qxm:C, 8qxm:B, 8qxm:D, 8qxn:A, 8qxn:B, 8qxn:C, 8qxn:D, 8qxo:A, 8qxo:B, 8qxo:D, 8qxo:C, 4rxo:A, 4rxo:B, 4rxo:C, 4rxo:D, 4rxp:A, 4rxp:B, 4rxq:A, 4rxq:B, 4rxr:A, 4rxr:B, 4rxs:A, 4rxs:B, 7s2y:A, 7s2y:B, 7s2y:C, 7s2y:D, 8tdv:A, 8tdv:B, 8tdw:A, 8tdw:B, 4tnp:A, 4tnp:C, 4tnp:D, 4tnp:B, 4tnq:A, 4tnq:D, 4tnq:C, 4tnq:B, 4tnr:D, 4tnr:A, 4tnr:C, 4tnr:B, 4tnx:A, 4tnx:C, 4tnx:D, 4tnx:B, 4tny:A, 4tny:C, 4tny:B, 4tny:D, 4tnz:C, 4tnz:B, 4tnz:A, 4tnz:D, 4to0:A, 4to0:D, 4to0:C, 4to0:B, 4to1:A, 4to1:B, 4to1:C, 4to1:D, 4to2:A, 4to2:D, 4to2:B, 4to2:C, 4to3:A, 4to3:D, 4to3:B, 4to3:C, 4to4:A, 4to4:D, 4to4:B, 4to4:C, 4to5:A, 4to5:D, 4to5:C, 4to5:B, 4to6:A, 4to6:D, 4to6:B, 4to6:C, 6tx0:A, 6tx0:B, 6txa:A, 6txa:B, 6txa:D, 6txa:C, 6txa:E, 6txa:F, 6txa:H, 6txa:G, 6txa:I, 6txa:L, 6txa:J, 6txa:K, 6txa:M, 6txa:N, 6txa:P, 6txa:O, 6txc:A, 6txc:B, 6txc:D, 6txc:C, 6txc:E, 6txc:F, 6txc:H, 6txc:G, 6txc:I, 6txc:J, 6txc:L, 6txc:K, 6txc:M, 6txc:N, 6txc:P, 6txc:O, 6txe:A, 6txe:B, 6txe:C, 6txe:D, 6txe:E, 6txe:F, 6txe:G, 6txe:H, 6txe:I, 6txe:J, 6txe:K, 6txe:L, 6txe:M, 6txe:N, 6txe:P, 6txe:O, 6txf:A, 6txf:B, 3u1n:A, 3u1n:B, 3u1n:C, 3u1n:D, 6u6x:A, 6u6x:D, 6u6y:A, 6u6y:D, 6u6y:B, 6u6y:C, 6u6z:A, 6u6z:D, 6u6z:B, 6u6z:C, 7ujn:A, 7ujn:B, 7ujn:C, 7ujn:D, 6xu1:A, 6xu1:B, 6xu1:C, 6xu1:D, 6xu1:E, 6xu1:F, 6xu1:G, 6xu1:H, 6yom:A, 6yom:B, 4zwe:A, 4zwe:C, 4zwe:D, 4zwe:B, 4zwg:A, 4zwg:D, 4zwg:B, 4zwg:C
8 5yhw:D 387 270 0.2331 0.2222 0.3185 6.98e-29 5yhw:H, 5yhw:E, 5yhw:G
9 5yhw:A 453 270 0.2331 0.1898 0.3185 2.20e-28 5yhw:B, 5yhw:C, 5yhw:F
10 6pwy:B 513 309 0.2412 0.1735 0.2880 6.49e-23 6pwy:A, 6pwy:D, 6pwy:C
11 2dqb:C 364 80 0.0840 0.0852 0.3875 2.35e-07 2dqb:A, 2dqb:B, 2dqb:D, 2dqb:E, 2dqb:F
12 6oiw:A 504 115 0.0894 0.0655 0.2870 0.002 6oi7:A, 6oi7:B, 6oi7:C, 6oi7:D, 6oi7:E, 6oi7:F, 6oiv:A, 6oiv:B, 6oiv:C, 6oiv:D, 6oiv:E, 6oiv:F, 6oiw:B, 6oiw:C, 6oiw:D, 6oiw:E, 6oiw:F, 6oiy:A, 6oiy:B, 6oiy:C, 6oiy:D, 6oiy:E, 6oiy:F, 4x9e:A, 4x9e:B
13 6oix:C 478 114 0.0894 0.0690 0.2895 0.002 6oix:A, 6oix:B, 6oix:D, 6oix:E, 6oix:F, 7u66:A, 7u66:B, 7u66:C, 7u66:D, 7u66:E, 7u66:F, 7u67:A, 7u67:D, 7u67:C, 7u67:B, 7u67:F, 7u67:E
14 3hc1:A 298 43 0.0488 0.0604 0.4186 0.15
15 1pvj:A 339 96 0.0623 0.0678 0.2396 1.0 4d8e:A, 4d8i:A, 1pvj:B, 1pvj:C, 1pvj:D, 4rkx:A, 6ukd:A, 6uqd:A, 6uqd:B, 2uzj:A, 2uzj:B
16 7xur:A 307 119 0.0867 0.1042 0.2689 1.8
17 6ui4:A 692 86 0.0569 0.0303 0.2442 1.8
18 1sz2:B 320 39 0.0407 0.0469 0.3846 2.0 1sz2:A
19 8a22:Ak 166 63 0.0542 0.1205 0.3175 2.2 8apn:Ak, 8apo:Ak
20 2c80:A 208 43 0.0461 0.0817 0.3953 2.7 2c80:B, 2ca8:A, 2caq:A, 2f8f:A, 2f8f:B, 1oe7:A, 1oe7:B, 1oe8:A, 1oe8:B
21 7zhu:B 543 46 0.0434 0.0295 0.3478 4.1 7zhu:A, 7zhv:B, 7zhw:A, 7zhw:B, 7zhx:A, 7zhy:A, 7zhy:B, 7zhz:A, 7zhz:B
22 1u3i:A 208 41 0.0434 0.0769 0.3902 5.0
23 3huf:A 301 67 0.0515 0.0631 0.2836 5.5
24 8bj3:A 360 135 0.0921 0.0944 0.2519 7.3 8bj3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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