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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQGEVKVDLDLSGKLVMPALFNTHTHAPMTLLRGVAEDLSFEEWLFSKV
LPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYFHEEWIAKAVRDFGMRALLTRGLVDSNGDDGGRLEENLKLYNEWN
GFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEYDLEDILNIGLKEVKTIAAHCVHLPERYFGVL
KDIPFFVSHNPASNLKLGNGIAPVQRMIEHGMKVTLGTDGAASNNSLNLFFEMRLASLLQKAQNPRNLDVNTCLKMVTYD
GAQAMGFKSGKIEEGWNADLVVIDLDLPEMFPVQNIKNHLVHAFSGEVFATMVAGKWIYFDGEYPTIDSEEVKRELARIE
KELY

The query sequence (length=404) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1p1m:A 404 404 1.0000 1.0000 1.0000 0.0 2plm:A
2 4f0r:A 436 377 0.3020 0.2798 0.3236 2.00e-56 4f0s:A
3 3lnp:A 441 416 0.3243 0.2971 0.3149 1.40e-55
4 4dyk:A 437 371 0.3045 0.2815 0.3315 4.61e-55 4dyk:B, 4gbd:A, 4gbd:B
5 4dzh:A 439 386 0.3243 0.2984 0.3394 5.36e-53
6 8is4:A 452 395 0.2599 0.2323 0.2658 9.27e-31 8is4:B, 8is5:A, 8is5:B, 7ww2:A, 7ww2:B
7 4v1x:E 474 405 0.2748 0.2342 0.2741 3.20e-29 4v1x:A, 4v1x:B, 4v1x:C, 4v1x:D, 4v1x:F, 4v1y:A, 4v1y:B, 4v1y:C, 4v1y:D, 4v1y:E, 4v1y:F, 4v1y:G, 4v1y:H, 4v1y:I, 4v1y:J, 4v1y:K, 4v1y:L
8 3hpa:A 428 371 0.2723 0.2570 0.2965 1.18e-28 3hpa:B
9 6oh9:A 452 341 0.2104 0.1881 0.2493 8.27e-18 6oha:A
10 6ohb:A 435 380 0.2327 0.2161 0.2474 1.92e-15 6ohb:B, 6ohb:C, 6ohb:D, 6ohc:A, 6ohc:B, 6ohc:C, 6ohc:D
11 3v7p:A 409 392 0.2203 0.2176 0.2270 4.06e-15 4m51:A
12 2paj:A 421 396 0.2450 0.2352 0.2500 1.36e-14
13 2uz9:A 444 333 0.1955 0.1779 0.2372 1.69e-14 4aql:A, 3e0l:A, 3e0l:B
14 5hmd:A 456 202 0.1312 0.1162 0.2624 1.07e-13 5hmd:B, 5hme:A, 5hme:B, 5hmf:A, 5hmf:B, 4lh8:A, 4lh8:B, 3ls9:A, 3ls9:B, 3lsb:A, 3lsb:B, 3lsc:A, 3lsc:B
15 2i9u:A 419 341 0.1931 0.1862 0.2287 1.29e-11 2i9u:B
16 4rdv:B 451 396 0.2129 0.1907 0.2172 2.99e-04 3mdu:A, 3mdw:A, 3mdw:B, 3mdw:C, 3mdw:D, 4rdv:A, 4rdv:C, 4rdv:D, 4rdw:A, 4rzb:A, 4rzb:B
17 2imr:A 380 335 0.1634 0.1737 0.1970 0.001
18 4cqb:A 402 379 0.2079 0.2090 0.2216 0.010 5akq:A, 5akq:B, 4cqb:B, 4cqc:A, 4cqc:B, 4cqd:A, 4cqd:B, 2qt3:A, 2qt3:B
19 2ood:A 463 362 0.2005 0.1749 0.2238 0.015
20 7uof:A 423 61 0.0545 0.0520 0.3607 0.017
21 7lkk:A 411 367 0.2153 0.2117 0.2371 0.032 7lkj:A, 7lkj:B, 7lkj:C, 7lkk:B, 7lkk:C, 7lkk:D
22 4b92:A 476 74 0.0619 0.0525 0.3378 0.30 4b92:B
23 2vr2:A 478 57 0.0520 0.0439 0.3684 0.38
24 7z8g:A 3047 259 0.1460 0.0194 0.2278 0.75 8fdu:A, 7z8l:f
25 7z8f:e 4579 95 0.0644 0.0057 0.2737 0.83 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
26 3icj:A 468 34 0.0396 0.0342 0.4706 0.93
27 4cns:D 479 51 0.0396 0.0334 0.3137 2.2 4cns:A, 4cns:B, 4cns:C
28 4cns:D 479 70 0.0446 0.0376 0.2571 8.3 4cns:A, 4cns:B, 4cns:C
29 3mpg:A 426 36 0.0297 0.0282 0.3333 2.2 3mpg:B, 4yiw:A, 4yiw:B
30 8phx:C 130 31 0.0297 0.0923 0.3871 2.3 8phx:A, 8phx:B, 8phx:D
31 2btp:A 248 55 0.0545 0.0887 0.4000 2.8 6bcr:A, 6bcr:B, 6bcr:E, 6bcr:F, 6bcy:A, 6bcy:B, 6bcy:E, 6bcy:F, 6bd1:A, 6bd1:B, 6bd1:E, 6bd1:F, 6bd2:A, 6bd2:B, 6bqt:A, 6bqt:B, 6bqt:D, 6bqt:E, 6bqt:G, 6bqt:H, 6bqt:J, 6bqt:K, 2btp:B, 6kzg:A, 6kzg:B, 6kzh:A, 6kzh:B
32 2ftw:A 484 74 0.0545 0.0455 0.2973 3.2
33 6nbo:A 390 66 0.0446 0.0462 0.2727 3.6
34 5tpx:A 106 32 0.0322 0.1226 0.4062 3.7
35 8bqf:D 215 37 0.0396 0.0744 0.4324 3.9 1ake:A, 1ake:B, 1ank:A, 1ank:B, 7apu:A, 7apu:B, 8bqf:A, 8bqf:B, 8bqf:C, 8bqf:E, 8bqf:F, 8crg:AA, 8crg:BA, 1e4v:A, 1e4v:B, 1e4y:A, 1e4y:B, 2eck:A, 2eck:B, 5eje:A, 5eje:B, 6ham:A, 6hap:A, 3hpq:A, 3hpq:B, 3hpr:A, 3hpr:B, 4jzk:A, 4jzk:B, 8q2b:A, 8q2b:B, 8rj4:A, 8rj4:B, 8rj4:C, 8rj4:D, 8rj6:A, 8rj6:B, 8rj9:A, 8rj9:B, 3x2s:A, 3x2s:B, 4x8l:A, 4x8l:B, 4x8o:A, 4x8o:B
36 6n91:A 334 222 0.1213 0.1467 0.2207 4.0 6n91:B
37 3mkv:A 414 39 0.0347 0.0338 0.3590 4.9 3mkv:B, 3mkv:C, 3mkv:D, 3mkv:E, 3mkv:F, 3mkv:G, 3mkv:H
38 5t5i:A 569 35 0.0322 0.0228 0.3714 7.9 5t5i:I, 5t5m:A, 5t61:A, 5t61:G, 5t61:M, 5t61:S, 5t61:Y, 5t61:e, 5t61:k, 5t61:q
39 1o12:A 363 73 0.0545 0.0606 0.3014 8.9 1o12:B
40 4tqt:D 481 72 0.0545 0.0457 0.3056 9.0 4tqt:A, 4tqt:B, 4tqt:C, 4tqt:E, 4tqt:F
41 6t65:C 218 45 0.0396 0.0734 0.3556 9.3 6t65:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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