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BioLiP
>protein
MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNG
VGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSATDDAEQEAV
AALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL

The query sequence (length=199) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1c7y:A 199 199 1.0000 1.0000 1.0000 2.36e-145 7pbu:B, 7pbu:D, 7pbu:C, 7pbu:A
2 7x7q:A 185 196 0.5327 0.5730 0.5408 1.86e-72 7x5a:A, 7x5a:C, 7x5a:F, 7x5a:B, 7x5a:G, 7x5a:D, 7x7q:C, 7x7q:F, 7x7q:D, 7x7q:E, 7x7q:H, 7x7q:B
3 7oa5:B 186 131 0.2513 0.2688 0.3817 1.63e-26 7oa5:A, 7oa5:E, 7oa5:H, 7oa5:C, 7oa5:G, 7oa5:D, 7oa5:F
4 8gh8:D 140 131 0.2312 0.3286 0.3511 2.83e-21 8gh8:C
5 8df7:A 850 61 0.1055 0.0247 0.3443 0.20 8df7:B, 8df8:A, 8df8:B, 8df9:B, 8dfb:A, 8dfb:B, 4gfj:A, 3m6k:B, 3m6z:A, 3m6z:B
6 1w7j:A 752 80 0.1005 0.0266 0.2500 0.29 7pm5:A, 7pm6:A, 7pm6:D, 7pm7:A, 7pm8:A, 7pm9:A, 7pma:A, 7pmb:A, 7pmc:A, 7pmd:A, 7pme:A, 7pme:D, 7pmf:A, 7pmg:A, 7pmh:A, 7pmi:A, 7pmj:A, 7pml:A, 1w7i:A
7 3au2:A 575 54 0.1005 0.0348 0.3704 0.31 3au6:A, 3auo:A, 3auo:B, 3b0x:A, 3b0y:A
8 8ab0:D 157 20 0.0603 0.0764 0.6000 2.2 8bpr:D
9 6qj6:A 265 71 0.1005 0.0755 0.2817 2.4 6qj6:E, 6rcz:A, 6rcz:E
10 5zvq:A 194 20 0.0603 0.0619 0.6000 3.1 8ab0:F, 8ab0:E, 8bpr:E, 8bpr:F
11 2bgw:A 219 60 0.0804 0.0731 0.2667 5.7
12 4o6o:D 199 15 0.0603 0.0603 0.8000 5.9 4o6o:A, 4o6o:B, 4o6o:C, 4o6p:B, 4o6p:C, 3vdp:A, 3vdp:B, 3vdp:C, 3vdp:D, 3vdu:A, 3ve5:D, 3ve5:A
13 7pg7:D 329 52 0.0955 0.0578 0.3654 6.7
14 7pbg:A 525 68 0.0955 0.0362 0.2794 8.0 7pbg:B, 7pbi:A, 7pbi:B, 7pbi:C, 7pbi:D, 7pbi:E, 7pbi:F, 7pbi:G, 7pbi:H
15 3ay6:B 267 43 0.0653 0.0487 0.3023 8.6 3aut:B, 3auu:A, 3auu:B, 3ay6:A, 3ay6:C, 3ay6:D
16 5z2v:B 197 34 0.0653 0.0660 0.3824 9.5 5z2v:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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