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BioLiP
>protein
MIEPLLLGIVLGLIPVTLAGLFVAAYLQYKRGNQF

The query sequence (length=35) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7zxy:G 35 35 1.0000 1.0000 1.0000 1.06e-18 7r0w:O, 7r0w:G, 7zxy:O
2 7zyv:G 34 34 0.7714 0.7941 0.7941 8.49e-14
3 1q90:G 30 29 0.6857 0.8000 0.8276 2.93e-11
4 2e76:G 37 34 0.6571 0.6216 0.6765 6.79e-04 4h13:G, 4i7z:G, 4pv1:G
5 3hbz:A 341 29 0.3429 0.0352 0.4138 6.2
6 8fux:A 322 15 0.2857 0.0311 0.6667 7.3 8fuw:A, 8fux:B, 6mgc:A
7 5ys3:A 188 31 0.4000 0.0745 0.4516 8.1 5ys3:C, 5ys3:B, 5ys8:A, 5ys8:B, 5ys8:C
8 5a7v:A 368 18 0.2571 0.0245 0.5000 8.7 5a7v:B
9 7vgf:A 550 34 0.3429 0.0218 0.3529 9.6 7vgf:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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