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BioLiP
>protein
MIEDIKGYKPHTEEKIGKVNAIKDAEVRLGLIFDALYDEFWEALDNCCEFAKNYAESLDQLTIAKTKLKEASMWACRAVF
QPEEKY

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7uq2:A 89 88 1.0000 0.9663 0.9773 1.71e-58 7uq2:E, 7uq2:B, 7uq2:D, 7uq2:C, 7uq2:F
2 8h2j:A 92 84 0.2907 0.2717 0.2976 0.002 8h2j:B, 8h2j:C, 8h2j:D, 8h2j:E, 8h2j:F, 8h39:A, 8h39:B, 8h39:C, 8h39:D, 8h39:E, 8h39:F, 8ixz:A, 8ixz:B, 8ixz:C, 8ixz:D, 8ixz:E, 8ixz:F, 8iy0:A, 8iy0:B, 8iy0:C, 8iy0:D, 8iy0:E, 8iy0:F, 8iy1:A, 8iy1:B, 8iy1:C, 8iy1:D, 8iy1:E, 8iy1:F, 8iy2:A, 8iy2:B, 8iy2:C, 8iy2:D, 8iy2:E, 8iy2:F, 8j8o:A, 8j8o:B, 8j8o:C, 8j8o:D, 8j8o:E, 8j8o:F
3 8idf:A 459 39 0.1512 0.0283 0.3333 2.7
4 6rz8:A 366 59 0.1977 0.0464 0.2881 2.7 6rz6:A, 6rz7:A, 6rz9:A
5 1w5f:A 315 31 0.1395 0.0381 0.3871 2.8 1w5f:B
6 5wu3:B 485 15 0.1163 0.0206 0.6667 3.3 5wu2:A, 5wu2:B, 5wu3:A, 5wu4:A, 5wu4:B
7 8s38:B 414 61 0.1744 0.0362 0.2459 5.4 8s38:A, 8s38:C, 8s39:A, 8s39:B, 8s39:C, 8s3a:A, 8s3a:B, 8s3a:C, 8s3a:D, 8s3a:E, 8s3a:F, 8s3b:A, 8s3b:B, 8s3b:C, 8s3b:D, 8s3b:E, 8s3b:F, 8s3b:G, 8s3b:H, 8s3b:I, 8s3b:J, 8s3b:K, 8s3b:L, 8s3c:B, 8s3d:A, 8s3d:B, 8s3d:C, 8s3d:D, 8s3d:E, 8s3d:F
8 7eew:A 610 58 0.2442 0.0344 0.3621 5.9
9 5zhe:B 200 61 0.1628 0.0700 0.2295 6.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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