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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MHHHHNLYFQSNAMKTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGA
IREIITDKPLLFTFRSAKAGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHK
TPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGA
VKKASAPGQISVADLRTVLTILHQA

The query sequence (length=265) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4guh:B 265 265 1.0000 1.0000 1.0000 0.0 4gug:A, 4gug:B, 4guh:A, 4gui:A, 4gui:B, 4guj:A, 4guj:B, 4iuo:A, 4iuo:B, 3m7w:A, 3m7w:B, 3m7w:C, 3m7w:D, 3m7w:E, 3m7w:F, 3nnt:A, 3nnt:B
2 8b2b:AAA 252 252 0.7283 0.7659 0.7659 8.47e-144 8b2b:BBB, 8b2c:AAA, 4clm:B, 4cno:A, 4cno:B, 4cno:C, 4cno:D, 4cnp:A, 4cnp:B, 6h5c:A, 6h5c:B, 6h5d:A, 6h5d:B, 6h5g:A, 6h5j:A, 1l9w:A, 1l9w:B, 1l9w:C, 1l9w:D, 1qfe:A, 1qfe:B, 6sfe:A, 6sfe:B, 6sfg:A, 4uio:A
3 4h3d:B 254 251 0.5283 0.5512 0.5578 5.15e-100 4h3d:A, 4h3d:C, 4h3d:D, 3js3:A, 3js3:B, 3js3:C, 3js3:D
4 8b2a:BBB 238 219 0.2830 0.3151 0.3425 1.33e-34 8b2a:AAA, 1sfj:A, 1sfj:B, 6sfh:A, 6sfh:B
5 2o7q:A 501 229 0.2642 0.1397 0.3057 5.90e-20 6bmb:A, 6bmq:A, 2gpt:A, 2o7s:A
6 6hqv:A 1555 219 0.1925 0.0328 0.2329 1.16e-04 6hqv:B
7 8dek:B 441 83 0.0906 0.0544 0.2892 1.1 8dek:A, 8df2:A, 8df2:B, 8df2:C, 8df2:D
8 4cvq:A 404 29 0.0415 0.0272 0.3793 2.3 4cvq:B
9 5k1s:A 358 100 0.1245 0.0922 0.3300 2.3 5k1s:C, 5k1s:B, 5k1s:D
10 7uor:A 379 11 0.0377 0.0264 0.9091 2.6 1f4t:A, 1f4t:B, 1f4u:A, 1f4u:B, 1io7:A, 1io7:B, 1io8:A, 1io8:B, 1io9:A, 1io9:B, 4tt5:A, 4tuv:A, 7uor:B, 7uor:C, 7uor:D, 7uor:E, 7uor:F, 4wpd:A, 4wpd:B, 4wqj:A
11 5wp6:A 977 70 0.0981 0.0266 0.3714 2.8 6bqv:A, 6bqv:C, 6bqv:B, 6bqv:D, 5wp6:B, 5wp6:C, 5wp6:D
12 2wja:A 146 53 0.0642 0.1164 0.3208 3.9 2wja:B
13 3t4k:A 268 53 0.0604 0.0597 0.3019 4.3 3t4j:A, 3t4j:B, 3t4k:B, 3t4l:A, 3t4l:B, 3t4o:A, 3t4o:B, 3t4q:A, 3t4q:B, 3t4s:A, 3t4s:B, 3t4t:A, 3t4t:B
14 2qm3:A 338 15 0.0415 0.0325 0.7333 4.6
15 3ddd:A 281 21 0.0377 0.0356 0.4762 4.8
16 7xij:A 131 16 0.0340 0.0687 0.5625 7.1
17 4luj:A 214 94 0.1057 0.1308 0.2979 8.1 4luj:B
18 6tg9:G 148 46 0.0491 0.0878 0.2826 8.7 6tg9:C, 6tga:G, 6tga:C
19 5fdn:A 914 139 0.1208 0.0350 0.2302 9.3 5fdn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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