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BioLiP
>protein
MHHHHHHGMEEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEWTVDVVPKAYTLNIKFAG

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1hz5:A 72 72 0.9444 0.9444 0.9444 3.89e-40 1hz5:B, 1jml:A, 1k51:A, 1k52:A, 1k52:B, 1k53:A, 1k53:B
2 5tvg:A 468 52 0.2083 0.0321 0.2885 0.56 5tvg:B, 5tvg:C, 5tvg:D, 5tvg:E, 5tvg:F, 5tvg:G, 5tvg:H, 5uof:B
3 1h76:A 677 52 0.2222 0.0236 0.3077 4.7
4 1m3u:A 262 27 0.1528 0.0420 0.4074 5.0 1m3u:B, 1m3u:C, 1m3u:D, 1m3u:E, 1m3u:F, 1m3u:G, 1m3u:H, 1m3u:I, 1m3u:J
5 5t4o:F 466 7 0.0972 0.0150 1.0000 7.0 8dbp:D, 8dbp:E, 8dbp:F, 8dbq:D, 8dbq:E, 8dbq:F, 8dbr:D, 8dbr:E, 8dbr:F, 8dbs:D, 8dbs:E, 8dbs:F, 8dbt:D, 8dbt:E, 8dbt:F, 8dbu:D, 8dbu:E, 8dbu:F, 8dbv:E, 8dbv:D, 8dbv:F, 8dbw:E, 8dbw:D, 8dbw:F, 3oaa:D, 3oaa:M, 3oaa:L, 3oaa:T, 3oaa:b, 6oqr:E, 6oqr:F, 6oqr:D, 6oqs:E, 6oqs:F, 6oqs:D, 6oqt:E, 6oqt:F, 6oqt:D, 6oqu:E, 6oqu:F, 6oqu:D, 6oqv:F, 6oqv:E, 6oqv:D, 6oqw:E, 6oqw:F, 6oqw:D, 6pqv:E, 6pqv:F, 6pqv:D, 5t4p:E, 5t4q:D, 6wnq:E, 6wnq:F, 6wnq:D, 6wnr:E, 6wnr:F, 6wnr:D
6 6fvt:L 388 33 0.1667 0.0309 0.3636 7.7 6ef0:L, 6ef1:L, 6ef2:L, 6ef3:L, 6fvu:L, 6fvv:L, 6fvw:L, 6fvx:L, 6fvy:L, 5mp9:L, 5mpa:L, 5mpb:L, 5mpc:L, 7qo4:L, 7qo5:L, 7qo6:L
7 4b2x:B 302 22 0.1528 0.0364 0.5000 8.3 4arw:A, 4arw:B, 4arw:C, 4arw:D, 4asj:A, 4asj:B, 4asj:C, 4asj:D, 4asy:A, 4asy:B, 4asy:C, 4asy:D, 4b2w:A, 4b2w:B, 4b2w:C, 4b2w:D, 4b2x:A, 4b2x:C, 4b2x:D, 4b3u:A, 4b3u:B, 4b3u:C, 4b3u:D, 4b42:A, 4b42:B, 4b42:C, 4b42:D, 4b4b:A, 4b4b:B, 4b4b:C, 4b4b:D, 4b4g:A, 4b4g:B, 4b4g:C, 4b4g:D, 4b4m:A, 4b4m:B, 4b4m:C, 4b4m:D, 4b5b:A, 4b5b:B, 4b5b:C, 4b5b:D, 5fts:A, 5fts:B, 5fts:C, 5fts:D, 5ftv:A, 5ftv:B, 5ftv:C, 5ftv:D, 5fu0:A, 5fu0:B, 5fu0:C, 5fu0:D, 5fu8:A, 5fu8:B, 5fu8:C, 5fu8:D, 5fuh:A, 5fuh:B, 5fuh:C, 5fuh:D, 1fxo:A, 1fxo:C, 1fxo:B, 1fxo:D, 1fxo:E, 1fxo:H, 1fxo:F, 1fxo:G, 5fye:A, 5fye:B, 5fye:C, 5fye:D, 1g0r:A, 1g0r:B, 1g0r:C, 1g0r:D, 1g0r:E, 1g0r:G, 1g0r:H, 1g1l:A, 1g1l:C, 1g1l:B, 1g1l:D, 1g1l:E, 1g1l:H, 1g1l:F, 1g1l:G, 1g23:A, 1g23:B, 1g23:C, 1g23:D, 1g23:E, 1g23:F, 1g23:G, 1g23:H, 1g2v:A, 1g2v:C, 1g2v:B, 1g2v:D, 1g2v:E, 1g2v:G, 1g2v:F, 1g2v:H, 1g3l:A, 1g3l:C, 1g3l:B, 1g3l:D, 6t37:A, 6t37:B, 6t37:C, 6t37:D, 6t38:A, 6t38:B, 6t38:C, 6t38:D, 6tqg:A, 6tqg:B, 6tqg:C, 6tqg:D, 3zlk:A, 3zlk:B, 3zlk:C, 3zlk:D, 3zll:A, 3zll:B, 3zll:C, 3zll:D
8 3rss:A 494 14 0.1111 0.0162 0.5714 9.2 2ax3:A, 3rrb:A, 3rre:A, 3rrf:A, 3rrj:A, 3rs8:A, 3rs9:A, 3rsf:A, 3rsg:A, 3rsq:A, 3rt7:A, 3rt9:A, 3rta:A, 3rtb:A, 3rtc:A, 3rtd:A, 3rte:A, 3rtg:A, 3ru2:A, 3ru3:A
9 2c44:C 468 31 0.2083 0.0321 0.4839 9.6 2c44:A, 2c44:D, 2c44:B, 5d8g:A
10 3m97:X 118 41 0.1667 0.1017 0.2927 9.8 1c7m:A, 1i6d:A, 1i6e:A, 1ql3:A, 1ql3:B, 1ql3:C, 1ql3:D, 1ql4:A, 1ql4:B, 1ql4:C, 1ql4:D
11 4w1y:B 433 31 0.2083 0.0346 0.4839 9.9
12 6c4w:A 109 39 0.1944 0.1284 0.3590 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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