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BioLiP
>protein
MHHHHHHAMEEVTIKANLIFANASTQTAEFKGTFEKATSEAYAYADTLKKDNGEWTVDVADKGYTLNIKFAG

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1hz5:A 72 72 0.9861 0.9861 0.9861 5.07e-48 1hz5:B, 1jml:A, 1k51:A, 1k52:A, 1k52:B, 1k53:A, 1k53:B
2 5tvg:A 468 52 0.2083 0.0321 0.2885 0.35 5tvg:B, 5tvg:C, 5tvg:D, 5tvg:E, 5tvg:F, 5tvg:G, 5tvg:H, 5uof:B
3 6fvt:L 388 33 0.1806 0.0335 0.3939 2.1 6ef0:L, 6ef1:L, 6ef2:L, 6ef3:L, 6fvu:L, 6fvv:L, 6fvw:L, 6fvx:L, 6fvy:L, 5mp9:L, 5mpa:L, 5mpb:L, 5mpc:L, 7qo4:L, 7qo5:L, 7qo6:L
4 3rss:A 494 14 0.1111 0.0162 0.5714 5.5 2ax3:A, 3rrb:A, 3rre:A, 3rrf:A, 3rrj:A, 3rs8:A, 3rs9:A, 3rsf:A, 3rsg:A, 3rsq:A, 3rt7:A, 3rt9:A, 3rta:A, 3rtb:A, 3rtc:A, 3rtd:A, 3rte:A, 3rtg:A, 3ru2:A, 3ru3:A
5 1h76:A 677 52 0.2222 0.0236 0.3077 5.5
6 7w02:A 1566 36 0.1806 0.0083 0.3611 5.6
7 4bub:B 483 33 0.1806 0.0269 0.3939 6.6 4bub:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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