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BioLiP Library
>protein
MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPL

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5j0n:F 356 64 1.0000 0.1798 1.0000 2.26e-42 5j0n:E, 5j0n:G, 5j0n:H, 1p7d:A, 1p7d:B, 2wcc:3, 1z19:B, 1z19:A, 1z1b:B, 1z1b:A, 1z1g:A, 1z1g:D, 1z1g:B, 1z1g:C
2 6x2f:A 1144 48 0.2500 0.0140 0.3333 0.77 7ssg:A, 6x26:A, 6x2n:A, 6x43:A, 6x4w:A, 6x4y:A, 6x50:A
3 6pij:A 351 36 0.2031 0.0370 0.3611 0.92 8fuk:A, 8fuk:B, 8fuk:C, 8fuk:D, 8fuk:E, 6lnb:G, 6lnb:F, 6lnb:E, 6lnb:D, 6lnb:C, 6lnc:G, 6lnc:F, 6lnc:E, 6lnc:D, 6lnc:C, 6pif:A, 6pif:B, 6pif:C, 6pif:D, 6pif:E, 6pig:A, 6pig:B, 6pig:C, 6pig:D, 6pig:E, 6pij:B, 6pij:C, 6pij:D, 6pij:E, 6uvn:G, 6uvn:F, 6uvn:E, 6uvn:H, 6uvn:D, 6v9q:B, 6v9q:C, 6v9q:D, 6v9q:E, 6v9q:F, 6vbw:B, 6vbw:C, 6vbw:D, 6vbw:F, 6vbw:E
4 6pif:F 310 36 0.2031 0.0419 0.3611 0.96 8fuk:F, 6lnb:B, 6lnc:B, 6pig:F, 6pij:F, 6uvn:C, 6v9q:G, 6vbw:G
5 4mvt:A 255 22 0.1406 0.0353 0.4091 6.2 4mvt:B, 4mvt:C, 4mvt:D
6 5egh:B 393 37 0.2031 0.0331 0.3514 7.4 5ege:A, 5ege:B, 5ege:C, 5ege:D, 5egh:A
7 4dxy:A 406 29 0.1562 0.0246 0.3448 7.7 3nv5:A, 3nv6:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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