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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MGQKWKLYEVKGGKVRRKNKFCPRCGPGVFMAEHKDRWSCGRCGYTEWKR

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6tmf:Z 50 50 1.0000 1.0000 1.0000 2.99e-32
2 5jb3:Y 50 50 0.8400 0.8400 0.8400 5.34e-28 5jbh:Y, 6sw9:Y, 6swc:Y, 6swe:Y, 4v4n:BY, 4v6u:AY, 7zag:Y, 7zah:Y, 7zai:Y, 7zhg:Y
3 2k4x:A 55 48 0.6800 0.6182 0.7083 9.24e-23
4 4bts:A9 93 35 0.4000 0.2151 0.5714 7.88e-10 4bts:B9, 4bts:C9, 4bts:D9
5 8hky:S27A 54 44 0.4600 0.4259 0.5227 1.35e-09 8hkz:S27A, 8hl1:S27A, 8hl2:S27A, 8hl3:S27A, 8hl4:S27A, 8hl5:S27A, 8wkp:S27A, 8wq2:S27A, 8wq4:S27A
6 4v5o:A9 98 34 0.4000 0.2041 0.5882 1.48e-09 4v5o:B9
7 6fyx:f 74 34 0.3800 0.2568 0.5588 5.98e-09 6fyy:f, 6gsm:f, 6gsn:f, 8i7j:f, 5it7:f, 5it9:f, 3j80:f, 3j81:f, 3jam:f, 3jap:f, 8rw1:f, 8s8d:f, 8s8e:f, 8s8f:f, 8s8g:f, 8s8h:f, 8s8i:f, 8s8j:f
8 6zj3:Sf 64 45 0.4600 0.3594 0.5111 5.32e-08
9 6uz7:f 44 38 0.3800 0.4318 0.5000 9.33e-08
10 4v6w:Af 80 45 0.4400 0.2750 0.4889 3.13e-07 6xu6:Af, 6xu7:Af, 6xu8:Af
11 4v7e:Bf 71 36 0.4200 0.2958 0.5833 3.56e-07 8auv:N, 8b2l:N1, 8r57:f
12 8rxh:Sf 80 46 0.4400 0.2750 0.4783 9.50e-07 6az1:f
13 9bh5:Af 50 45 0.4400 0.4400 0.4889 9.56e-07 9cai:Af
14 7ase:j 79 46 0.4600 0.2911 0.5000 1.24e-06 5opt:j, 8ova:A9, 4v8m:A9
15 4v92:Bf 64 33 0.3600 0.2812 0.5455 1.33e-06
16 7old:Sf 74 45 0.4400 0.2973 0.4889 2.55e-06 7olc:Sf, 8oo0:Sf, 7r81:g2, 7z3n:Sf, 7z3o:Sf
17 8g5z:Sf 75 45 0.4400 0.2933 0.4889 3.61e-06 7a01:Q3, 7a09:U, 5a2q:f, 5aj0:Bf, 8bhf:g3, 8btk:AC, 4d5l:f, 4d61:f, 6d90:gg, 6d9j:gg, 9f1b:AC, 9f1c:AC, 9f1d:AC, 6fec:p, 5flx:f, 6g18:f, 6g51:f, 6g53:f, 6g5h:f, 6g5i:f, 8g5y:Sf, 8g60:Sf, 8g61:Sf, 8g6j:Sf, 8glp:Sf, 6gz3:Bf, 6gz4:Bf, 6gz5:Bf, 6hcf:g1, 6hcj:g2, 6hcm:g1, 6hcq:g2, 8ifd:3R, 8ife:3R, 6ip5:3R, 6ip6:3R, 6ip8:3R, 3j7p:Sf, 3j7r:Sf, 3jag:ff, 3jah:ff, 3jai:ff, 3jaj:Sf, 3jan:Sf, 7jqb:g, 7jqc:g, 5k0y:p, 8k2c:Sf, 7k5i:f, 4kzx:f, 4kzy:f, 4kzz:f, 5lks:Sf, 7ls1:U3, 7ls2:U3, 5lzs:ff, 5lzt:ff, 5lzu:ff, 5lzv:ff, 5lzw:ff, 5lzx:ff, 5lzy:ff, 5lzz:ff, 7mdz:ff, 7mq8:NT, 7mq9:NT, 7mqa:NT, 6mtb:ff, 6mtc:ff, 6mtd:ff, 6mte:ff, 7nwg:g2, 7nwh:ff, 7nwi:ff, 7o7y:AC, 7o7z:AC, 7o80:AC, 7o81:AC, 5oa3:f, 6ole:Sf, 6olf:Sf, 6olg:Bf, 6oli:Sf, 6olz:Bf, 6om0:Sf, 6om7:Sf, 8oz0:p, 8p03:f, 8p09:f, 8p2k:AC, 6p4g:g, 6p4h:g, 6p5i:g, 6p5j:g, 6p5k:g, 6p5n:g, 8pj1:k, 8pj2:k, 8pj3:k, 8pj4:k, 8pj5:k, 8pj6:k, 8ppk:f, 8ppl:Af, 8q7z:AC, 8q87:AC, 7qgg:Sf, 8qoi:Sf, 7qp6:k, 7qp7:k, 6qzp:Sf, 7r4x:f, 6r5q:0, 6r6g:0, 6r6p:0, 6r7q:0, 8scb:ff, 6sgc:g1, 7syg:g, 7syh:g, 7syi:g, 7syj:g, 7syk:g, 7syl:g, 7sym:g, 7syn:g, 7syo:g, 7syp:g, 7syq:g, 7syr:g, 7sys:g, 7syt:g, 7syu:g, 7syv:g, 7syw:g, 7syx:g, 5t2c:AH, 8t4s:f, 7toq:AS31, 7tor:AS31, 7tql:g, 4ug0:Sf, 4ujc:Cf, 4ujd:Cf, 4uje:Bf, 4v6x:Af, 5vyc:f1, 5vyc:f2, 5vyc:f3, 5vyc:f4, 5vyc:f5, 5vyc:f6, 6w2s:g, 6w2t:g, 7wtt:f, 7wtu:f, 7wtv:f, 7wtw:f, 7wtz:f, 7wu0:f, 6xa1:Sf, 7xnx:Sf, 7xny:Sf, 8xsx:Sf, 8xsy:Sf, 8xsz:Sf, 8xxl:Sf, 8xxm:Sf, 8xxn:Sf, 6y0g:Sf, 6yal:f, 6yam:f, 6yan:f, 6ybs:k, 8yoo:Sf, 8yop:Sf, 6z6l:Sf, 6z6m:Sf, 6z6n:Sf, 7zjw:SD, 7zjx:SD, 6zlw:g, 6zm7:Sf, 6zme:Sf, 6zmi:Sf, 6zmo:Sf, 6zmt:g, 6zmw:k, 6zn5:g, 6zoj:f, 6zol:f, 6zon:U, 6zp4:U, 6zuo:f, 6zv6:f, 6zvh:f, 6zvj:U, 6zvk:Q3, 6zxd:f, 6zxe:f, 6zxf:f, 6zxg:f, 6zxh:f
18 4v88:Cf 76 33 0.3600 0.2368 0.5455 3.81e-06 4uer:9, 4v88:Af, 4v8y:A5, 4v8z:A5
19 5dat:e1 76 33 0.3600 0.2368 0.5455 4.07e-06 7a1g:N, 7b7d:N, 8bn3:E1, 8bqd:N, 8bqx:N, 8cah:N, 8cas:O, 5dat:E1, 5dc3:E1, 5dc3:e1, 5dge:E1, 5dge:e1, 5dgf:E1, 5dgf:e1, 5dgv:E1, 5dgv:e1, 6eml:N, 8eub:Bf, 8evp:Bf, 8evq:Bf, 8evr:Bf, 8evs:Bf, 8evt:Bf, 8ewb:Bf, 8ewc:Bf, 5fci:E1, 5fci:e1, 5fcj:E1, 5fcj:e1, 6gq1:AW, 6gqb:AW, 6gqv:AW, 6hhq:g, 6hhq:e1, 5i4l:E1, 5i4l:e1, 6i7o:N, 6i7o:Nb, 3j6x:31, 3j6y:31, 3j77:31, 3j78:31, 5juo:CC, 5jup:CC, 5jus:CC, 5jut:CC, 5juu:CC, 8k2d:Sf, 8k82:Sf, 5lyb:E1, 5lyb:e1, 5m1j:f2, 5mc6:N, 5mei:e1, 5mei:g, 7mpi:Bf, 7mpj:Bf, 7n8b:Bf, 5ndg:E1, 5ndw:E1, 5ndw:e1, 7nrc:SN, 7nrd:SN, 5obm:E1, 5obm:e1, 5on6:e1, 5on6:g, 7osa:eS31, 6q8y:N, 6rbe:f, 7rr5:Sf, 6s47:Bg, 6snt:f, 6sv4:N, 6sv4:Nb, 6sv4:Nc, 6t4q:Sf, 6t7i:Sf, 6t7t:Sf, 6t83:fb, 6t83:6, 5tbw:g, 5tbw:e1, 6tb3:N, 5tga:E1, 5tga:e1, 5tgm:E1, 5tgm:e1, 6tnu:N, 4u3m:E1, 4u3m:e1, 4u3n:E1, 4u3n:e1, 4u3u:E1, 4u3u:e1, 4u4n:E1, 4u4n:e1, 4u4o:E1, 4u4o:e1, 4u4q:E1, 4u4q:e1, 4u4r:E1, 4u4r:e1, 4u4u:E1, 4u4u:e1, 4u4y:E1, 4u4y:e1, 4u4z:E1, 4u4z:e1, 4u50:E1, 4u50:e1, 4u51:E1, 4u51:e1, 4u52:E1, 4u52:e1, 4u53:E1, 4u53:e1, 4u55:E1, 4u55:e1, 4u56:E1, 4u56:e1, 4u6f:E1, 4u6f:e1, 6wdr:f, 5wyj:Sg, 8y0u:Sf, 6z6j:Sf, 6z6k:Sf, 6zce:g, 7zpq:Af, 7zrs:Af, 6zu9:O, 7zuw:Af, 7zux:Df, 6zvi:Q, 7zw0:sN
20 6woo:ff 44 35 0.3400 0.3864 0.4857 4.74e-06 8ccs:8, 8cdl:8, 8cdr:8, 8ceh:8, 8cf5:8, 8cg8:8, 8cgn:8, 8civ:8, 8cku:8, 8cmj:8, 7osm:eS31
21 5xxu:f 45 43 0.4600 0.5111 0.5349 6.72e-06
22 5ndg:e1 45 21 0.2800 0.3111 0.6667 8.74e-06
23 8c3a:h 70 36 0.3600 0.2571 0.5000 3.26e-05 8c3a:DS, 8cq7:h, 8cq7:DS, 8cqw:h, 8cqw:DS, 8cre:h, 8cre:DS, 8oeq:h, 8oeq:DS, 7pzy:g, 7q08:g, 7q0f:g, 7q0p:g, 7q0r:g
24 7wtx:f 61 27 0.3200 0.2623 0.5926 5.72e-04 9bkd:k, 9bln:k
25 6zu5:LJJ 89 38 0.3200 0.1798 0.4211 0.017
26 6rm3:SFF 68 35 0.2600 0.1912 0.3714 0.023
27 8p5d:SFF 58 33 0.2400 0.2069 0.3636 0.049 8p60:SFF, 8p60:RFF, 7qca:SFF
28 7oqy:Y 92 28 0.2000 0.1087 0.3571 0.12
29 7qep:O7 86 38 0.3000 0.1744 0.3947 0.26
30 8p5d:LJJ 89 38 0.3000 0.1685 0.3947 0.68 8p60:LJJ, 8p60:KJJ, 7qca:LJJ
31 1b8t:A 192 32 0.2600 0.0677 0.4062 0.71 1ctl:A
32 6rm3:LJJ 90 38 0.2800 0.1556 0.3684 0.72
33 7qvp:Rh 41 17 0.2000 0.2439 0.5882 0.82 6y57:sh
34 4v8p:AA 91 38 0.2400 0.1319 0.3158 0.95 4v8p:DA, 4v8p:FA, 4v8p:HA
35 7d59:I 108 29 0.2400 0.1111 0.4138 0.99 7a6h:I, 7ae1:I, 7ae3:I, 7aea:I, 7dn3:I, 7du2:I, 7fji:I, 7fjj:I, 8ity:I, 8iue:I, 8iuh:I
36 1ffk:W 73 37 0.2600 0.1781 0.3514 1.1
37 6hiw:DC 1095 29 0.2400 0.0110 0.4138 1.1
38 2a20:A 60 26 0.2200 0.1833 0.4231 1.4 2cjs:C
39 1b71:A 191 17 0.1600 0.0419 0.4706 1.5 1dvb:A, 1jyb:A, 1lkm:A, 1lko:A, 1lkp:A, 1qyb:A, 1ryt:A, 1s2z:A, 1s30:A
40 2o13:A 58 32 0.2600 0.2241 0.4062 2.3
41 4v6x:Cj 90 33 0.2600 0.1444 0.3939 2.3 7a01:C2, 8a3d:d, 5aj0:Aj, 8b5l:j, 8b6c:j, 9bdl:AL37, 9bdn:AL37, 9bdp:AL37, 7bhp:Lj, 8bhf:W1, 8bpo:i2, 8btk:Bj, 7cpu:Lj, 7cpv:Lj, 4d5y:j, 4d67:j, 6d90:j, 6d9j:j, 9f1b:Bj, 9f1c:Bj, 9f1d:Bj, 7f5s:Lj, 8fkp:LW, 8fkq:LW, 8fkr:LW, 8fks:LW, 8fkt:LW, 8fku:LW, 8fkv:LW, 8fkw:LW, 8fkx:LW, 8fky:LW, 8fkz:LW, 8fl2:LW, 8fl3:LW, 8fl4:LW, 8fl6:LW, 8fl7:LW, 8fl9:LW, 8fla:LW, 8flb:LW, 8flc:LW, 8fld:LW, 8fle:LW, 8flf:LW, 6frk:j, 6ftg:j, 6fti:j, 6ftj:j, 8g5y:Lj, 8g5z:Lj, 8g60:Lj, 8g61:Lj, 8g6j:Lj, 8glp:Lj, 6gz3:Aj, 6gz4:Aj, 6gz5:Aj, 6hcf:j3, 6hcj:j3, 6hcm:j3, 6hcq:j3, 8idt:M, 8idy:M, 8ie3:M, 8ifd:2d, 8ife:2d, 8ine:M, 8inf:M, 8ink:M, 6ip5:2d, 6ip6:2d, 6ip8:2d, 8ipd:M, 8ipx:M, 8ipy:M, 8ir1:M, 8ir3:M, 3j7o:j, 3j7p:j, 3j7q:j, 3j7r:j, 3j92:j, 3jag:j, 3jah:j, 3jai:j, 3jaj:j, 3jan:j, 8jdj:o, 8jdk:o, 8jdl:o, 8jdm:o, 8k2c:Lj, 5lks:Lj, 6lqm:M, 6lsr:M, 6lss:M, 7ls1:d2, 7ls2:d2, 6lu8:M, 5lzs:j, 5lzt:j, 5lzu:j, 5lzv:j, 5lzw:j, 5lzx:j, 5lzy:j, 5lzz:j, 7mdz:j, 6mtb:j, 6mtc:j, 6mtd:j, 6mte:j, 7nfx:j, 7nwg:j3, 7nwh:j, 7nwi:j, 7o7y:Bj, 7o7z:Bj, 7o80:Bj, 7o81:Bj, 7obr:j, 8ohd:Lj, 8oj0:Lj, 8oj5:Lj, 8oj8:Lj, 6ole:k, 6olf:k, 6olg:Aj, 6oli:k, 6olz:Aj, 6om0:k, 6om7:k, 7ow7:d, 7oya:j1, 7oyb:j1, 7oyc:j1, 7oyd:j, 8p2k:Bj, 6p5i:Aj, 6p5j:Aj, 6p5k:Aj, 6p5n:Aj, 8q7z:Bj, 8q87:Bj, 8qfd:j, 7qgg:k, 8qoi:Lj, 7qvp:Mj, 7qvp:Lj, 7qwq:j, 7qwr:j, 7qws:j, 6qzp:Lj, 6r5q:j, 6r6g:j, 6r6p:j, 6r7q:j, 8rjb:j, 8rjc:j, 8rjd:j, 8scb:j, 6sgc:j2, 6swa:h, 5t2c:d, 6t59:j3, 7tm3:j, 7toq:AL37, 7tor:AL37, 7tut:j, 7ucj:j, 7uck:j, 4ug0:Lj, 4ujc:Bj, 4ujd:Aj, 4uje:Cj, 4v5z:B2, 6w6l:k, 6xa1:Lj, 7xnx:Lj, 7xny:Lj, 8xsx:Lj, 8xsy:Lj, 8xsz:Lj, 6y0g:Lj, 8y0w:Lj, 8y0x:Lj, 6y2l:Lj, 6y57:Lj, 6y6x:Lj, 8yoo:Lj, 8yop:Lj, 6z6l:Lj, 6z6m:Lj, 6z6n:Lj, 7zjw:Lm, 7zjx:Lm, 6zm7:Lj, 6zme:Lj, 6zmi:Lj, 6zmo:Lj, 6zvk:C2
42 5uc6:A 151 23 0.1800 0.0596 0.3913 2.6
43 6dcf:D 1176 31 0.2400 0.0102 0.3871 3.2 6vvv:D
44 6vvt:D 1200 31 0.2400 0.0100 0.3871 3.2
45 6z11:D 1254 31 0.2400 0.0096 0.3871 3.2 6ccv:D, 6eyd:D, 6f6w:D, 5tw1:D, 5vi5:D, 5vi8:D, 6vvs:D
46 8hvr:D 1259 31 0.2400 0.0095 0.3871 3.2 8dy7:D, 8dy9:D, 8jke:D, 8k60:D, 7vpd:D, 7vpz:D, 7x74:D, 7x75:D, 7x76:D
47 8ej3:D 1281 31 0.2400 0.0094 0.3871 3.2 6bzo:D, 6c04:D, 6c05:D, 6c06:D, 6dv9:D, 6dvb:D, 6dvc:D, 6dvd:D, 6dve:D, 8e74:D, 8e79:D, 8e82:D, 8e8m:D, 8e95:D, 6edt:D, 6ee8:D, 6eec:D, 8ehq:D, 8eoe:D, 8eof:D, 8eos:D, 8eot:D, 8exy:D, 6fbv:D, 8hih:D, 6jcx:D, 6jcy:D, 7kif:D, 7kim:D, 7kin:D, 6kon:D, 6koo:D, 6kop:D, 6koq:D, 6m7j:D, 7p5x:AD, 7pp4:d, 8q3i:D, 7q4u:D, 7q4u:J, 7q4u:P, 7q4u:W, 7q4u:CA, 7q4u:IA, 7q4u:OA, 7q4u:UA, 7q59:D, 7q59:d, 7rwi:D, 6tye:D, 6tyf:D, 6tyg:D, 7u22:D, 5uh5:D, 5uh6:D, 5uh8:D, 5uh9:D, 5uha:D, 5uhb:D, 5uhc:D, 5uhd:D, 5uhe:D, 5uhf:D, 5uhg:D, 6vvx:D, 6vvy:D, 6vvz:D, 6vw0:D, 6yxu:D, 6yys:D, 7z8q:d, 7zf2:D, 5zx2:D, 5zx3:D
48 8f6t:A 428 25 0.2200 0.0257 0.4400 4.3
49 8f6t:A 428 34 0.2000 0.0234 0.2941 8.1
50 7oba:I 105 26 0.1800 0.0857 0.3462 4.7 7ob9:I, 7obb:I
51 9bh5:Cj 88 39 0.2600 0.1477 0.3333 4.7 9cai:Cj
52 6eko:A 312 19 0.1800 0.0288 0.4737 8.6 6eko:B
53 5kwk:B 457 44 0.3000 0.0328 0.3409 8.8 5koe:A, 5kor:B, 5kor:C, 5kor:A, 5kor:D, 5kwk:A, 5kx6:A, 5kx6:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417