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BioLiP
>protein
MGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQNPGK

The query sequence (length=38) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mnt:B 38 38 1.0000 1.0000 1.0000 1.43e-23 7mnt:D, 7mnu:B
2 7mns:B 38 38 0.8158 0.8158 0.8158 2.45e-19
3 7mnr:B 40 38 0.6842 0.6500 0.6842 4.91e-15
4 7mnp:B 39 33 0.5526 0.5385 0.6364 1.18e-11 7mnp:D, 7mnq:B
5 7mnv:B 38 32 0.6053 0.6053 0.7188 3.21e-11
6 7mo5:B 36 29 0.5000 0.5278 0.6552 2.46e-09
7 7mo2:B 38 35 0.4474 0.4474 0.4857 7.68e-08 3ch5:B, 7mo2:D
8 2ebq:A 47 25 0.3684 0.2979 0.5600 3.38e-06 2gqe:A, 2k0c:A
9 2ebv:A 57 39 0.4474 0.2982 0.4359 9.86e-06
10 2ebr:A 47 26 0.3947 0.3191 0.5769 1.32e-05
11 2d9g:A 53 24 0.3947 0.2830 0.6250 2.63e-05
12 7mo3:B 38 34 0.3421 0.3421 0.3824 6.39e-05 7mo3:D, 7mo4:B, 7mo4:D
13 8pp6:K 36 23 0.3684 0.3889 0.6087 0.001
14 7mo1:B 34 21 0.2895 0.3235 0.5238 0.003
15 3a9j:C 32 25 0.2105 0.2500 0.3200 0.31 9avt:C, 9avw:C, 7e62:C, 7e62:J, 2wwz:C, 2wx0:C, 2wx0:G, 2wx1:C
16 8f5o:B 1134 21 0.2368 0.0079 0.4286 1.5 8f5p:B
17 8f5o:B 1134 33 0.3421 0.0115 0.3939 5.0 8f5p:B
18 6u04:A 168 33 0.3421 0.0774 0.3939 2.4 5erc:A
19 6jk8:B 801 26 0.2105 0.0100 0.3077 6.6
20 6jk8:A 823 26 0.2105 0.0097 0.3077 7.3 1igr:A, 7v3p:B
21 4y4v:A 316 15 0.2105 0.0253 0.5333 8.2 4y4v:B
22 7sl4:A 786 32 0.3158 0.0153 0.3750 9.1 8dtm:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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