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BioLiP
>protein
MGDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEASLVKIE

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1yjt:A 75 75 0.9867 0.9867 0.9867 6.15e-50 1yjv:A
2 8ioy:A 816 71 0.6400 0.0588 0.6761 1.45e-27
3 7si6:A 873 69 0.6000 0.0515 0.6522 7.13e-26 7si3:A, 7si7:A
4 7si6:A 873 66 0.4000 0.0344 0.4545 1.80e-12 7si3:A, 7si7:A
5 6a71:B 71 66 0.3867 0.4085 0.4394 2.59e-16 6a72:A
6 1y3j:A 77 64 0.3867 0.3766 0.4531 6.19e-14
7 1s6u:A 76 74 0.3867 0.3816 0.3919 3.01e-12
8 1kvj:A 79 69 0.3467 0.3291 0.3768 1.02e-11 3cjk:B, 2k1r:A, 5t7l:B
9 3dxs:X 74 70 0.3600 0.3649 0.3857 5.53e-11
10 1fvs:A 72 66 0.2933 0.3056 0.3333 1.42e-10 2ggp:B
11 1oq6:A 76 62 0.3200 0.3158 0.3871 5.66e-10
12 1kqk:A 80 65 0.2667 0.2500 0.3077 8.07e-09
13 1k0v:A 73 68 0.2933 0.3014 0.3235 2.03e-07 3i9z:A, 2qif:A, 2qif:B
14 6ff2:A 67 61 0.2267 0.2537 0.2787 1.12e-05 6ff2:B
15 4a48:B 69 67 0.2667 0.2899 0.2985 1.33e-05 4a48:A, 4a4j:A, 2xmw:A
16 1mwz:A 73 43 0.2000 0.2055 0.3488 0.002
17 1afj:A 72 66 0.2133 0.2222 0.2424 0.004
18 4tkp:B 63 54 0.2133 0.2540 0.2963 0.018
19 8q74:A 783 71 0.2533 0.0243 0.2676 0.17 8q75:A, 8q76:A
20 8jfk:B 1033 44 0.2133 0.0155 0.3636 0.30 8jfk:N, 8jfk:J, 8jfk:F, 8jfl:B, 8jfl:N, 8jfl:F, 8jfl:J, 8xya:B
21 1txc:A 157 33 0.1467 0.0701 0.3333 2.9 1txc:B
22 2qim:A 157 34 0.1600 0.0764 0.3529 5.4 3e85:A, 5mxb:A, 5mxw:A
23 4s28:A 520 54 0.1733 0.0250 0.2407 5.7 4n7q:A, 4s25:A, 4s26:A, 4s26:B, 4s27:A, 4s29:A
24 6gqf:A 168 49 0.2267 0.1012 0.3469 7.9 6gqf:B, 6gqf:C, 6gqf:D
25 1jfi:B 135 21 0.1200 0.0667 0.4286 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417