Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFVKQVFFDLGARIHADEARALVAKLLDDTQPGLVSALMNYMPASKTSKTEFPLVQFSNFNQGFALLGFGEVGAQILSDA
TPIIHDAMAKLFASRGQGVVVQVSSRDVPLSCEKRPYGLQYTVAKMVVQKKHEHRERLANPETGKVFLEGLFLRSLERQA
AAVGMVLPRDLVVSFKGAERVSSVKLRPDSTLAHGSLRHAVFEVNARLGGLWSVGFLLSKGFGHINTDLQLGQG

The query sequence (length=234) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xfz:H 234 234 1.0000 1.0000 1.0000 1.88e-173 7xg0:H, 7xg2:H, 7xg3:H, 7xg4:H
2 3ebl:A 323 134 0.1410 0.1022 0.2463 0.027 3ebl:B, 3ebl:C, 3ebl:D, 3ebl:E, 3ebl:F, 3ed1:A, 3ed1:B, 3ed1:C, 3ed1:D, 3ed1:E, 3ed1:F
3 5iqc:A 301 183 0.1667 0.1296 0.2131 0.034 5byl:A, 5byl:B, 5byl:C, 5byl:D, 6c5u:A, 6c5u:B, 6c5u:C, 6c5u:D, 6cav:A, 6cav:B, 6cav:C, 6cav:D, 6cey:A, 6cey:B, 6cey:C, 6cey:D, 6cgd:A, 6cgd:B, 6cgd:C, 6cgd:D, 6cgg:A, 6cgg:B, 6cgg:C, 6cgg:D, 6ch4:A, 6ch4:B, 6ch4:C, 6ch4:D, 5iqa:A, 5iqa:B, 5iqa:C, 5iqa:D, 5iqb:A, 5iqb:B, 5iqb:C, 5iqb:D, 5iqc:B, 5iqc:C, 5iqc:D, 5iqd:A, 5iqd:B, 5iqd:C, 5iqd:D, 5iqe:A, 5iqe:B, 5iqe:C, 5iqe:D, 5iqf:A, 5iqf:B, 5iqf:C, 5iqf:D, 5iqg:A, 5iqg:B, 5iqg:C, 5iqg:D, 5iqh:A, 5iqh:B, 5iqh:C, 5iqh:D, 5iqi:A, 5iqi:B, 5iqi:C, 5iqi:D, 4ork:A, 4ork:B, 4ork:C, 4ork:D
4 6h9h:A 250 186 0.1966 0.1840 0.2473 0.43 6h9h:B, 6h9i:A, 6h9i:B
5 7qkr:A 1199 45 0.0641 0.0125 0.3333 6.4 7qks:A
6 4dns:A 486 123 0.1325 0.0638 0.2520 7.9 4dns:B
7 8tj5:M 1659 83 0.0855 0.0121 0.2410 9.7 8tj5:O

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218