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BioLiP
>protein
MFNPTTLFQLIALFLVITSGPAIIVLIAFRRGNL

The query sequence (length=34) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8wb4:Y 34 34 1.0000 1.0000 1.0000 1.30e-17 8wb4:y, 8xr6:Y, 8xr6:y
2 8xlp:y 32 32 0.7059 0.7500 0.7500 2.40e-10 8xlp:Y
3 6j3z:y 34 34 0.4118 0.4118 0.4118 6.80e-05 6j3z:Y, 6j40:y, 6j40:Y, 7vd5:y
4 6dhe:y 30 26 0.3824 0.4333 0.5000 0.069 8gn0:Y, 8gn1:Y, 4il6:y, 7yq2:Y, 7yq2:y, 7yq7:y
5 6b5v:A 589 19 0.3235 0.0187 0.5789 1.0 6b5v:B, 6b5v:D, 6b5v:C
6 8fhi:A 610 19 0.3235 0.0180 0.5789 1.0 6dmu:A, 6dmu:B, 6dmu:C, 6dmu:D, 8ffn:A, 8ffn:B, 8ffn:C, 8ffn:D, 8ffo:A, 8ffo:D, 8ffo:B, 8ffo:C, 8ffq:A, 8ffq:B, 8ffq:C, 8ffq:D, 8fhh:A, 8fhh:B, 8fhh:C, 8fhh:D, 8fhi:B, 8fhi:C, 8fhi:D, 6pbe:A, 6pbe:B, 6pbe:C, 6pbe:D, 6pbf:A, 6pbf:B, 6pbf:D, 6pbf:C, 7t6m:A, 7t6m:B, 7t6m:C, 7t6m:D, 7t6q:A, 7t6q:B, 7t6q:C, 7t6q:D, 8tf2:A, 8tf2:D, 8tf2:B, 8tf2:C, 8tf3:A, 8tf3:D, 8tf3:B, 8tf3:C, 8tf4:A, 8tf4:D, 8tf4:B, 8tf4:C
7 5iwp:A 591 19 0.2941 0.0169 0.5263 3.2 5wo8:A
8 7tbw:A 1928 32 0.2647 0.0047 0.2812 5.3
9 7roq:A 1831 32 0.2647 0.0049 0.2812 5.8
10 7tby:A 1788 32 0.2647 0.0050 0.2812 5.9 7tc0:A
11 7k4e:B 620 19 0.2941 0.0161 0.5263 6.8 7d2k:A, 6d7o:A, 6d7p:A, 6d7q:A, 6d7t:A, 6d7t:B, 6d7t:C, 6d7t:D, 6d7v:A, 6d7x:A, 8foa:A, 8foa:B, 8foa:D, 8foa:C, 8fob:A, 8fob:D, 8fob:B, 8fob:C, 5iwk:A, 5iwr:A, 5iwt:A, 7k4a:A, 7k4a:D, 7k4a:B, 7k4a:C, 7k4b:A, 7k4b:B, 7k4b:D, 7k4b:C, 7k4c:A, 7k4c:B, 7k4c:C, 7k4c:D, 7k4d:A, 7k4d:B, 7k4d:C, 7k4d:D, 7k4e:C, 7k4e:D, 7k4f:A, 7k4f:B, 7k4f:C, 7k4f:D, 7s88:A, 7s88:B, 7s88:C, 7s88:D, 7s89:A, 7s89:D, 7s89:B, 7s89:C, 7s8b:A, 7s8b:B, 7s8b:D, 7s8b:C, 7s8c:A, 7s8c:B, 7s8c:C, 7s8c:D, 8sp8:A, 8sp8:B, 8sp8:C, 8sp8:D, 5wo6:A, 5wo7:A, 5wo9:A
12 1tll:A 630 26 0.2941 0.0159 0.3846 9.5 1f20:A, 1tll:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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