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BioLiP
>protein
MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQFAWRHYYWYLTDAGILYLREY
LALPAEIVPATIK

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 9bh5:AK 93 93 1.0000 1.0000 1.0000 1.88e-65 9cai:AK
2 6xu6:AK 90 90 0.6559 0.6778 0.6778 1.35e-41 6xu7:AK, 6xu8:AK
3 9bkd:a 99 95 0.6022 0.5657 0.5895 1.92e-35 7a01:E3, 7a09:u, 5a2q:K, 5aj0:BK, 9bdl:AS10, 9bdn:AS10, 9bdp:AS10, 8bhf:L3, 9bln:a, 8btk:Aj, 7cpu:SK, 7cpv:SK, 4d5l:K, 4d61:K, 6d90:LL, 6d9j:LL, 9f1b:Aj, 9f1c:Aj, 9f1d:Aj, 6fec:t, 5flx:K, 6g51:K, 6g53:K, 6g5h:K, 6g5i:K, 8g5y:SK, 8g5z:SK, 8g60:SK, 8g61:SK, 8g6j:SK, 8glp:SK, 6gz3:BK, 6gz4:BK, 6gz5:BK, 6hcf:L1, 6hcj:L2, 6hcm:L1, 6hcq:L2, 8ifd:2u, 8ife:2u, 6ip5:2u, 6ip6:2u, 6ip8:2u, 3j7p:SK, 3j7r:SK, 3jag:KK, 3jah:KK, 3jai:KK, 3jaj:SK, 3jan:SK, 8jdj:7, 8jdk:7, 8jdl:7, 8jdm:7, 7jqb:L, 7jqc:L, 5k0y:t, 8k2c:SK, 7k5i:K, 4kzx:K, 4kzy:K, 4kzz:K, 5lks:SK, 7ls1:v2, 7ls2:v2, 5lzs:KK, 5lzt:KK, 5lzu:KK, 5lzv:KK, 5lzw:KK, 5lzx:KK, 5lzy:KK, 5lzz:KK, 7mdz:KK, 6mtb:KK, 6mtc:KK, 6mtd:KK, 6mte:KK, 7nwg:L2, 7nwh:KK, 7nwi:KK, 7o7y:Aj, 7o7z:Aj, 7o80:Aj, 7o81:Aj, 5oa3:K, 6ole:SK, 6olf:SK, 6olg:BK, 6oli:SK, 6olz:BK, 6om0:SK, 6om7:SK, 7oya:K2, 7oyb:K2, 7oyc:K2, 7oyd:KK, 8oz0:i, 8p03:M, 8p09:M, 8p2k:Aj, 6p4g:L, 6p4h:L, 6p5i:L, 6p5j:L, 6p5k:L, 6p5n:L, 8pj1:a, 8pj2:a, 8pj3:a, 8pj4:a, 8pj5:a, 8pj6:a, 8ppk:K, 8ppl:AK, 8q7z:Aj, 8q87:Aj, 7qgg:SK, 8qoi:SK, 7qp6:a, 7qp7:a, 7qvp:SK, 7qvp:RK, 6qzp:SK, 7r4x:K, 6r5q:SS, 6r6g:SS, 6r6p:SS, 6r7q:SS, 8scb:KK, 6sgc:L1, 7syg:L, 7syh:L, 7syi:L, 7syj:L, 7syk:L, 7syl:L, 7sym:L, 7syn:L, 7syo:L, 7syp:L, 7syq:L, 7syr:L, 7sys:L, 7syt:L, 7syu:L, 7syv:L, 7syw:L, 7syx:L, 5t2c:Av, 8t4s:K, 7toq:AS10, 7tor:AS10, 7tql:M, 7ucj:KK, 7uck:KK, 4ug0:SK, 4ujc:CK, 4ujd:CK, 4uje:BK, 4v6x:AK, 5vyc:K1, 5vyc:K2, 5vyc:K3, 5vyc:K4, 5vyc:K5, 5vyc:K6, 6w2s:L, 6w2t:L, 6xa1:SK, 7xnx:SK, 7xny:SK, 8xsx:SK, 8xsy:SK, 8xsz:SK, 8xxl:SK, 8xxm:SK, 8xxn:SK, 6y0g:SK, 8y0w:SK, 8y0x:SK, 6y2l:SK, 6y57:SK, 6yal:M, 6yam:M, 6yan:M, 6ybs:a, 8yoo:SK, 8yop:SK, 6z6l:SK, 6z6m:SK, 6z6n:SK, 7zjw:SV, 7zjx:SV, 6zlw:M, 6zm7:SK, 6zme:SK, 6zmi:SK, 6zmo:SK, 6zmt:M, 6zmw:a, 6zn5:M, 6zoj:K, 6zol:K, 6zon:u, 6zp4:u, 6zuo:K, 6zv6:K, 6zvh:K, 6zvj:u, 6zvk:E3, 6zxd:K, 6zxe:K, 6zxf:K, 6zxg:K, 6zxh:K
4 7qiy:F 92 93 0.5914 0.5978 0.5914 2.30e-35 8auv:l, 8b2l:l1, 7qiz:PA
5 4v6w:AK 95 92 0.5914 0.5789 0.5978 4.02e-35
6 6zj3:SN 92 93 0.5806 0.5870 0.5806 1.29e-33
7 4v7e:BK 96 93 0.5699 0.5521 0.5699 2.47e-33 8ip8:da, 8ip9:da, 8ipa:da, 8ipb:da, 8jiw:BK, 8r57:K
8 6fyx:K 96 91 0.5591 0.5417 0.5714 7.11e-31 6fyy:K, 6gsm:K, 6gsn:K, 8i7j:K, 5it7:K, 5it9:K, 3j80:K, 3j81:K, 3jam:K, 3jap:K, 8rw1:K, 8s8d:K, 8s8e:K, 8s8f:K, 8s8g:K, 8s8h:K, 8s8i:K, 8s8j:K, 6uz7:K
9 8bn3:C0 96 91 0.5484 0.5312 0.5604 4.62e-30 7a1g:C, 7b7d:C, 8bqd:C, 8bqx:C, 8cah:C, 8cas:D, 8ccs:n, 8cdl:n, 8cdr:n, 8cf5:n, 8cku:n, 5dat:C0, 5dat:c0, 5dc3:C0, 5dc3:c0, 5dge:C0, 5dge:c0, 5dgf:C0, 5dgf:c0, 5dgv:C0, 5dgv:c0, 8eub:BK, 8evp:BK, 8evq:BK, 8evr:BK, 8evs:BK, 8evt:BK, 8ewb:BK, 8ewc:BK, 5fci:C0, 6gq1:AA, 6gqb:AA, 6gqv:AA, 6hhq:L, 6hhq:c0, 5i4l:C0, 5i4l:c0, 6i7o:C, 6i7o:Cb, 3j6x:10, 3j6y:10, 3j77:10, 3j78:10, 5juo:HB, 5jup:HB, 5jus:HB, 5jut:HB, 5juu:HB, 8k2d:SK, 8k82:SK, 5m1j:K2, 5mc6:C, 5mei:c0, 5mei:L, 7mpi:BK, 7mpj:BK, 7n8b:BK, 5ndg:C0, 5ndg:c0, 5ndv:C0, 5ndv:c0, 5ndw:C0, 5ndw:c0, 7nrc:SC, 7nrd:SC, 5obm:C0, 5obm:c0, 5on6:c0, 5on6:L, 7osa:eS10, 6q8y:C, 6rbe:K, 7rr5:SK, 6s47:BL, 6snt:K, 6sv4:C, 6sv4:Cb, 6sv4:Cc, 6t4q:SK, 6t7i:SK, 6t7t:SK, 6t83:Kb, 6t83:l, 5tbw:L, 5tbw:c0, 6tb3:C, 5tga:C0, 5tgm:C0, 5tgm:c0, 6tnu:C, 4u3m:C0, 4u3m:c0, 4u3n:C0, 4u3n:c0, 4u3u:C0, 4u3u:c0, 4u4n:C0, 4u4n:c0, 4u4o:C0, 4u4o:c0, 4u4q:C0, 4u4q:c0, 4u4r:C0, 4u4r:c0, 4u4u:C0, 4u4u:c0, 4u4y:C0, 4u4y:c0, 4u4z:C0, 4u4z:c0, 4u50:C0, 4u50:c0, 4u51:C0, 4u51:c0, 4u52:C0, 4u52:c0, 4u53:C0, 4u53:c0, 4u55:C0, 4u55:c0, 4u56:C0, 4u56:c0, 4u6f:C0, 4u6f:c0, 4uer:7, 4v88:AK, 4v88:CK, 4v8y:AK, 4v8z:AK, 4v92:BK, 6wdr:K, 6woo:KK, 6xiq:AA, 6xir:AA, 6z6j:SK, 6z6k:SK, 6zce:L, 7zpq:AK, 7zrs:AK, 6zu9:D, 7zuw:AK, 7zux:DK, 6zvi:s, 7zw0:sC
10 7r81:L2 90 91 0.5591 0.5778 0.5714 1.69e-28 7olc:SK, 7old:SK, 8oo0:SK, 7z3n:SK, 7z3o:SK
11 8c3a:M 98 91 0.5161 0.4898 0.5275 4.48e-27 8c3a:CX, 8cgn:n, 8cq7:M, 8cq7:CX, 8cqw:M, 8cqw:CX, 8cre:M, 8cre:CX, 8oeq:M, 8oeq:CX, 7pzy:L, 7q08:L, 7q0f:L, 7q0p:L, 7q0r:L, 8q5i:L
12 5fci:c0 96 84 0.4946 0.4792 0.5476 2.21e-26 5fcj:C0, 5fcj:c0, 5lyb:C0, 5lyb:c0, 5tga:c0
13 5xxu:K 94 90 0.4624 0.4574 0.4778 6.45e-26
14 4v8m:AD 103 96 0.4624 0.4175 0.4479 3.15e-24 8ova:AD, 8ove:AD
15 7ase:N 93 87 0.4194 0.4194 0.4483 4.29e-23 5opt:n
16 8a98:SN 101 96 0.4301 0.3960 0.4167 5.00e-23 8a3w:SN, 6az1:N, 8ovj:SN, 8rxh:SN, 8rxx:SN, 5t2a:AD
17 3j7a:O 79 78 0.4409 0.5190 0.5256 1.73e-22 3jbn:O, 3jbo:O, 3jbp:O, 6okk:O, 8tpu:SO
18 7qca:SK0 91 91 0.3548 0.3626 0.3626 4.81e-12 8p5d:SK0, 8p60:SK0, 8p60:RK0
19 5xyi:K 90 93 0.3226 0.3333 0.3226 6.79e-12
20 4v5o:A7 104 84 0.3441 0.3077 0.3810 2.20e-11 4bts:A7, 4bts:B7, 4bts:C7, 4bts:D7, 4v5o:B7
21 8bsj:SL 109 99 0.3333 0.2844 0.3131 5.65e-10 8br8:SL, 8brm:SL, 8bsi:SL, 8btd:SL, 8btr:SL, 8fvy:K, 8g4s:K
22 7pwf:K 83 84 0.3333 0.3735 0.3690 1.24e-08
23 6zu5:SK0 74 73 0.2366 0.2973 0.3014 5.24e-08
24 7qep:C0 81 52 0.1935 0.2222 0.3462 0.19
25 8ceh:n 33 22 0.1183 0.3333 0.5000 0.27 8cg8:n, 8civ:n, 8cmj:n, 7osm:eS10
26 4i2w:A 904 47 0.1613 0.0166 0.3191 0.31 4i2z:A
27 6bwl:A 313 35 0.1290 0.0383 0.3429 1.1
28 1cxa:A 124 76 0.2473 0.1855 0.3026 1.2 1cxc:A, 2cxb:A, 2cxb:B, 1l9b:C, 1l9j:C, 1l9j:D
29 1r23:A 104 41 0.1720 0.1538 0.3902 1.7 1r22:A, 1r22:B, 1r23:B
30 7y1n:A 1171 67 0.1720 0.0137 0.2388 1.9 7vlr:A, 7vls:A, 7vlt:A, 7vlu:A, 7y1k:A, 7y1m:A
31 3upt:A 671 58 0.1505 0.0209 0.2414 2.9 3upt:B
32 6v4x:J 311 51 0.1290 0.0386 0.2353 3.3
33 7s5x:E 1412 33 0.1720 0.0113 0.4848 5.3 6pz9:C, 7s5v:E, 7s5y:E, 7s5z:E, 7s60:E, 7s61:E, 8ti1:E, 8ti1:H, 8ti1:G, 8ti1:F, 8ti2:E, 8ti2:H, 8ti2:G, 8ti2:F, 7w4o:B, 7w4o:D, 7w4o:F, 7w4o:H, 7w4p:B, 7w4p:D, 7w4p:F, 7w4p:H
34 6qyi:B 520 33 0.1183 0.0212 0.3333 7.3 6b1b:A, 6b1b:B, 6eb0:C, 6qyh:B, 6qyi:A
35 5zeb:K 147 32 0.1183 0.0748 0.3438 8.8 6dzi:K, 6dzp:K, 8fr8:T, 8kab:K, 5o60:K, 5o61:K, 7s0s:L, 8v9j:L, 8v9k:L, 8v9l:L, 8whx:M, 8why:M, 8wi7:M, 8wi8:M, 8wib:M, 8wic:M, 7xam:K, 5xym:J, 8xz3:K, 7y41:K, 5zep:K, 5zet:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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