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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MFEKLYSAIIYSDEFKKILLGRGVDDLEIASAYIAFLYEDLPIIGKNLCAAFLRMGLDAVYNVMPSGKVYSPRHKLYPIS
RYGIDGVCINCDGGKIILRISNKGYDPEDLLESKGLESRIFVSKNFKKKSMEIIEKIWDVNKIRLIARKEILERISAGGI
LHMIR

The query sequence (length=165) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8yk9:D 165 165 1.0000 1.0000 1.0000 9.74e-118 8yk9:B, 8yk9:C
2 8z9e:G 175 45 0.0970 0.0914 0.3556 1.4
3 3q4r:A 170 86 0.1394 0.1353 0.2674 1.6 3q4o:A, 3q4q:A
4 3vyr:B 371 64 0.1333 0.0593 0.3438 1.9 3vys:B, 3vyt:B, 3vyu:B, 2z1d:A, 2z1d:B
5 1m0w:A 481 75 0.1091 0.0374 0.2400 2.0 1m0w:B
6 3viu:A 703 117 0.2061 0.0484 0.2906 2.7
7 6oid:A 289 39 0.0788 0.0450 0.3333 6.9 6oid:B
8 4unm:B 609 66 0.1030 0.0279 0.2576 7.0 5lxz:B, 4unm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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