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BioLiP
>protein
MERNRLARQIIDTCLEMTRLGLNAGNVSVRYQGGMLITPTGIPYEKLTEDKIVFIDADGQHEQGKLPSSEWRFHQAAYQT
RPDAQAVVHNHAVHCTAVSILNRPIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVAVALKHRKATLLQHHGLIACEAS
LEKALWLAHEVEVLAQLYLSTLAITDPVPVLDDEAIAIVLEKF

The query sequence (length=203) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2fua:A 210 206 0.9015 0.8714 0.8883 1.30e-136 1dzu:P, 1dzv:P, 1dzw:P, 1dzx:P, 1dzy:P, 1dzz:P, 1e46:P, 1e47:P, 1e48:P, 1e49:P, 1e4a:P, 1e4b:P, 1e4c:P, 1fua:A, 3fua:A, 4fua:A, 7x78:A
2 4c25:A 212 183 0.3793 0.3632 0.4208 5.07e-41 4c24:A
3 6btg:A 207 192 0.3399 0.3333 0.3594 7.19e-35 6btd:A
4 6voq:A 207 165 0.2463 0.2415 0.3030 6.37e-14
5 8il8:A 230 177 0.2217 0.1957 0.2542 3.67e-10 8il8:B, 8il8:C, 8il8:D
6 1jdi:A 223 124 0.1921 0.1749 0.3145 4.34e-10 1jdi:B, 1jdi:C, 1jdi:D, 1jdi:E, 1jdi:F, 1k0w:A, 1k0w:B, 1k0w:C, 1k0w:D, 1k0w:E, 1k0w:F
7 4xxf:A 249 180 0.2217 0.1807 0.2500 7.94e-10
8 2z7b:A 237 149 0.1675 0.1435 0.2282 9.79e-06
9 4m6r:A 224 110 0.1232 0.1116 0.2273 0.058 4m6r:B, 4m6r:C, 4m6r:D
10 2zpa:B 662 118 0.1576 0.0483 0.2712 1.2 2zpa:A
11 3kgd:B 342 80 0.1281 0.0760 0.3250 2.4 3kgd:A, 3kgd:C, 3kgd:D, 1qmh:B, 3tut:A, 3tux:A, 3tv1:A, 3tv1:B, 3tw3:A
12 7t1q:A 377 58 0.0985 0.0531 0.3448 2.9 8f8o:A, 8f8o:B, 7t1q:B
13 5kd6:A 400 93 0.1232 0.0625 0.2688 5.6 5kcl:A, 5kcl:B, 5kcq:A, 5kcq:B, 5kcy:A, 5kcy:B, 5kd0:A, 5kd0:B, 5kd6:B, 5kda:A, 5kda:B
14 8s9u:E 678 43 0.0591 0.0177 0.2791 8.9 8s9t:E, 8s9v:E, 8s9x:E
15 4ck8:B 450 78 0.0887 0.0400 0.2308 9.0 5ajr:A, 4bmm:A, 4bmm:B, 4bmm:C, 4bmm:D, 4by0:A, 4by0:B, 4c0c:A, 4c27:A, 4c27:B, 4c28:A, 4c28:B, 4ck8:A, 4ck9:A, 4cka:A, 4coh:A, 4coh:B, 6fmo:A, 6fmo:B, 6fmo:C, 6fmo:D, 4h6o:A, 3k1o:A, 3khm:A, 3ksw:A, 4uqh:A, 4uvr:A, 2wuz:A, 2wuz:B, 2wx2:A, 2wx2:B, 3zg2:A, 3zg3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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